HNJM2BCX2_l01_n02_TR_286-5_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HNJM2BCX2_l01_n02_TR_286-5_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1211833
Sequences flagged as poor quality	0
Sequence length	151
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TTACCCACCCAGCATGGAGCAACTAAATATGTAGAGCATATATGAACAAA	1750	0.14440933693008856	No Hit
GTTATGTGTTGGCCTTTGGCTCAAGTCATGAATTTAGGGTCCTGGAATTG	1654	0.13648745330420942	No Hit
ACATTCTACTGAACAACCAATTGGGTTCGTGGGCAAACCAAAATAGGAAC	1608	0.13269155073347566	No Hit
GTCATGAATGGGTGGGTGGAAGGGACAGCGGTGGGTGTGTGGGGTGCAGC	1562	0.12889564816274188	No Hit
CCCTGTGCCATCCCCCACTGCCACCCTGCTGCACCCCACACACCCACCGC	1515	0.12501722597090523	No Hit
CCATCTCAACAGATGCAGAAAAAGCATTTGATAGCGCTGCTACCAAATCA	1397	0.11527991068076213	No Hit
GTAGCATGTTGTTTAGTCTCTGTGTTTATGAATTTCCAGTTTTCTTCTTG	1242	0.1024893694098114	No Hit
AAGTTGGAGAACGTTCTAGGGGCACTTGAGAGGAGTATATTCCTTTTGCT	1227	0.1012515750932678	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAGCGAA	510	0.0	75.33556	1
TACGTGT	225	0.0	67.634735	3
TGACGCC	265	0.0	65.67276	145
GTTACGT	255	0.0	62.542732	1
TTACGTG	250	0.0	60.87377	2
GGTTATA	275	0.0	60.630272	1
GTCGTCT	120	6.002665E-11	54.385254	145
CGAAAGC	735	0.0	51.26831	4
GCGAAAG	760	0.0	50.535347	3
AGCGAAA	750	0.0	50.245018	2
ACGTGTT	320	0.0	49.820225	4
GAGCAAA	3340	0.0	49.051952	1
GTATACG	60	4.947949E-4	48.32848	1
GTCGAAT	60	4.9560145E-4	48.312515	2
ACTCCGA	330	0.0	46.131725	1
GCCGACC	210	0.0	44.889416	145
AGACGAC	250	0.0	43.47947	3
ATGGGTG	830	0.0	42.78454	8
AATGGGT	835	0.0	42.528343	7
TCGCCGG	440	0.0	41.20095	145