HNJM2BCX2_l01_n02_TR_283-5_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HNJM2BCX2_l01_n02_TR_283-5_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1400630
Sequences flagged as poor quality	0
Sequence length	151
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAGCAAAAGCAGGGTGACAAAAACATAATGGACTCCAACACCATGTCAAG	3638	0.2597402597402597	No Hit
GAGCAAAAGCAGGTAGATATTTAAAGATGAGTCTTCTAACCGAGGTCGAA	2456	0.17534966407973554	No Hit
ACATTCTACTGAACAACCAATTGGGTTCGTGGGCAAACCAAAATAGGAAC	1805	0.12887057966772095	No Hit
TTACCCACCCAGCATGGAGCAACTAAATATGTAGAGCATATATGAACAAA	1705	0.12173093536480012	No Hit
GTTATGTGTTGGCCTTTGGCTCAAGTCATGAATTTAGGGTCCTGGAATTG	1683	0.12016021361815755	No Hit
GTCATGAATGGGTGGGTGGAAGGGACAGCGGTGGGTGTGTGGGGTGCAGC	1593	0.1137345337455288	No Hit
CCCTGTGCCATCCCCCACTGCCACCCTGCTGCACCCCACACACCCACCGC	1513	0.10802281830319213	No Hit
CCATCTCAACAGATGCAGAAAAAGCATTTGATAGCGCTGCTACCAAATCA	1502	0.10723745742987084	No Hit
ACCCCTTACTTGGATGGACTTGACAGATACACACAGAACCCTCCATCCAA	1438	0.1026680850760015	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAGCGAA	435	0.0	113.2938	1
TGACGCC	280	0.0	82.88153	145
AGCGAAA	780	0.0	63.178562	2
GTTACGT	335	0.0	60.57588	1
CGAAAGC	810	0.0	59.941795	4
GCGAAAG	835	0.0	59.882866	3
ACTCCGA	300	0.0	55.563942	1
GCAGGTA	745	0.0	55.448467	9
GAGCAAA	4485	0.0	52.19472	1
GTCGTCT	100	4.694266E-8	50.76494	145
ATGTCGA	100	4.7180947E-8	50.732296	1
CTCCGAG	345	0.0	50.41359	2
TCCGAGG	360	0.0	48.3113	3
AGTCGGC	105	6.9339876E-8	48.3113	5
AAGCAGG	6245	0.0	45.835777	7
GCGACTA	160	2.0008883E-11	45.29184	4
GCGATTA	150	5.347829E-10	43.512802	145
GTTATGT	715	0.0	42.57256	1
GATATAC	275	0.0	42.162586	3
AGACGAC	230	0.0	40.959576	3