HNJM2BCX2_l01_n02_TR_123-7_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HNJM2BCX2_l01_n02_TR_123-7_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2666345
Sequences flagged as poor quality	0
Sequence length	151
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCCTGTGCCATCCCCCACTGCCACCCTGCTGCACCCCACACACCCACCGC	3830	0.14364232685567696	No Hit
ACCCCTTACTTGGATGGACTTGACAGATACACACAGAACCCTCCATCCAA	3589	0.13460373657572444	No Hit
TTACCCACCCAGCATGGAGCAACTAAATATGTAGAGCATATATGAACAAA	3365	0.1262027232034864	No Hit
GTTATGTGTTGGCCTTTGGCTCAAGTCATGAATTTAGGGTCCTGGAATTG	3362	0.1260902096315368	No Hit
ACATTCTACTGAACAACCAATTGGGTTCGTGGGCAAACCAAAATAGGAAC	3290	0.12338988390474602	No Hit
GTCATGAATGGGTGGGTGGAAGGGACAGCGGTGGGTGTGTGGGGTGCAGC	2977	0.1116509678980027	No Hit
CCATCTCAACAGATGCAGAAAAAGCATTTGATAGCGCTGCTACCAAATCA	2945	0.11045082313054012	No Hit
GCAGTGCAGCAACTAAATATGTAGAGCATATATGAACAAACCTAAGAGAA	2828	0.10606279382450509	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GAGCGAA	810	106.504166	1
TGACGCC	625	73.088104	145
GTTACGT	545	63.848312	1
CGAAAGC	1385	62.273617	4
TACGTGT	560	62.1241	3
AGCGAAA	1390	62.051937	2
TTACGTG	595	58.471935	2
GCGAAAG	1585	57.159397	3
ACTCCGA	810	51.0146	1
AGTCGGC	290	49.98491	5
GGTTATA	560	47.89811	1
GAGCAAA	7660	45.521965	1
TCTCGGG	830	45.426723	145
GGTCGTT	260	44.602753	7
TCCGAGG	915	43.566082	3
GTCGTCT	350	43.504826	145
TCGCCGC	290	42.504715	145
ACGTGTT	825	42.169083	4
GATAGCC	420	39.706783	145
AAGCAGG	10865	39.62523	7