HNJM2BCX2_l01_n01_TR_644-2_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HNJM2BCX2_l01_n01_TR_644-2_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1028
Sequences flagged as poor quality	0
Sequence length	151
%GC	45

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GTCATACTCCTCTGCATTGTCTCCGAAGAAATAAGACCCTTCATTACTCA	7	0.6809338521400778	No Hit
GAGCAAAAGCAGGTAGATATTTAAAGATGAGTCTTCTAACCGAGGTCGAA	6	0.5836575875486382	No Hit
GAGCAAAAGCAGGGTGACAAAAACATAATGGACTCCAACACCATGTCAAG	4	0.38910505836575876	No Hit
CCTCTGCATTGTCTCCGAAGAAATAAGACCCTTCATTACTCATGTCAAAG	4	0.38910505836575876	No Hit
CTTATACACATCTCCGAGCCCACGAGACCGAGGCTGATCTCGTATGCCGT	4	0.38910505836575876	No Hit
ATATACAACAGGATGGGAACAGTGACCACAGAAGCTGCTTTTGGTCTAGT	3	0.2918287937743191	No Hit
CTCCTCTGCATTGTCTCCGAAGAAATAAGACCCTTCATTACTCATGTCAA	3	0.2918287937743191	No Hit
GTTGTATATGAGGCCCATGCAACTGGCAAGTGCACCAGTTGAATAGCTTA	3	0.2918287937743191	No Hit
CTGTCATACTCCTCTGCATTGTCTCCGAAGAAATAAGACCCTTCATTACT	3	0.2918287937743191	No Hit
TCATTACTCATGTCAAAGGAAGGCACGATCGGGTTCGTTGCCTTTTCGTC	3	0.2918287937743191	No Hit
ATACACATCTCCGAGCCCACGAGACCGAGGCTGATCTCGTATGCCGTCTT	3	0.2918287937743191	TruSeq Adapter, Index 10 (95% over 21bp)
GTAACACACTCTGTTAACCTTCTAGAAGACAAGCATAACGGGAAACTATG	3	0.2918287937743191	No Hit
TATAACTTCTGTTCGCATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA	3	0.2918287937743191	TruSeq Adapter, Index 18 (96% over 30bp)
CTCTTGTTCTACTTCAAGCAGTAGTTGTAAGGCTTGCATAAATGTTATTT	3	0.2918287937743191	No Hit
GTCAACATCCACAGCACTCTGCTGTTCCTGTTGATATTCTTCCCTCATGG	2	0.19455252918287938	No Hit
GAGCAAAAGCAGGGGAAAACAAAAGCAACAAAAATGAAGGCAATACTAGT	2	0.19455252918287938	No Hit
ATCCTAGCTCCAGTGCTGGTCTGAAAGATGACCTTCTTGAAAATTTGCAG	2	0.19455252918287938	No Hit
CCTCTCGTCATTGCAGCAAATATCATTGGGATCTTGCACCTGATATTGTG	2	0.19455252918287938	No Hit
GTAGAAACAAGGGTATTTTTCCTCAACTGTCATACTCCTCTGCATTGTCT	2	0.19455252918287938	No Hit
GAATAAGAGAGGCTATCTAATAAGAGCACTGACATTAAATACGATGACCA	2	0.19455252918287938	No Hit
CTCCCCGCCCCTGGAAGGACAAATCTTCTGGCTTTGCACTTTCCATCATT	2	0.19455252918287938	No Hit
GTAGAAACAAGGGTGTTTTTTATCATTAAATAAGCTGAAACGAGAAAGCT	2	0.19455252918287938	No Hit
GTACTTTTTGATTATGGCCATATGGTCCACAGTGGTCTTAGTGAGTATCT	2	0.19455252918287938	No Hit
CATCTCCGAGCCCACGAGACCGAGGCTGATCTCGTATGCCGTCTTCTGCT	2	0.19455252918287938	TruSeq Adapter, Index 10 (96% over 26bp)
GGTCTAGTGTGTGCCACTTGTGAACAGATTGCTGATTCACAGCATCGGTC	2	0.19455252918287938	No Hit
CTCTAGCTCTATGTTGACAAAATGACCATCGTCAACATCCACAGCACTCT	2	0.19455252918287938	No Hit
TTCCTATACAGTTTAACTGCTTTGTCCATGTTATTTGGATCCCCGTTCCC	2	0.19455252918287938	No Hit
GTAGGTACAGATGCAATTGTCATTCTAAGTGTCTCGCTGGATTCCTCTTT	2	0.19455252918287938	No Hit
CATTCTAAGTGTCTCGCTGGATTCCTCTTTCAAGATCCATTCCACGATTT	2	0.19455252918287938	No Hit
TATTTAAAGCGACGATAAATACATTTGAAAAAAAGACGATCAGTAATCCA	2	0.19455252918287938	No Hit
CTGTAGACACAGTACTAGAAAAGAATGTAACAGTAACACACTCTGTTAAC	2	0.19455252918287938	No Hit
CCCTTAGTAGTATCAAGGTCTCTAATCGGTTAAAGATTACACTGAAGTTC	2	0.19455252918287938	No Hit
TTCTCATTGCATGTACCATCTGCCTAGTCTGATTAGCAACCTCCATGGCC	2	0.19455252918287938	No Hit
AAATTGAGACTGGCCACAGGATTGAGGAATATCCCGTCTATTCAATCTAG	2	0.19455252918287938	No Hit
AGTTATCCCTGCACACACATGTGATTTCACTAGAATCAGGATAACAGGAG	2	0.19455252918287938	No Hit
AAACTATTCTCTGTCGCTTTCAATCTGTGCCGCATTTCTTCAATTAACCA	2	0.19455252918287938	No Hit
ATCCATGTTGTTCGGGTCCCCATTCCCATTTAGGGCATTTTGGACAAAGC	2	0.19455252918287938	No Hit
GGCACGGTGAGCGTGAACACAAATCCTAAAATTCCCTTAGTCAGAGGTGA	2	0.19455252918287938	No Hit
AGCCAGCACCATTCTGTTTTCATGCCTGATTAGTGGATTGGTGGTAGTAG	2	0.19455252918287938	No Hit
ACCCAGGAGATTTCATCGATTATGAGGAGCTAAGAGAGCAATTGAGCTCA	2	0.19455252918287938	No Hit
CTCAAGGCACCAAACGATCATATGAACAAATGGAGACTGGTGGGGAGCGC	2	0.19455252918287938	No Hit
GGTTCATGCTCATGCCTAGGCAAAAGATAATAGGCCCTCTTTGCGTGCGA	2	0.19455252918287938	No Hit
TTTCATTTCTGCTCTGGAGGTAGTGAAGGTCTCCCATTCTCATCACAGTT	2	0.19455252918287938	No Hit
ATTACATCCTTTAAGAAATCTATTAGCCTTCCTGACTCATTAGCTGTTAG	2	0.19455252918287938	No Hit
GACTCAGGCACTCCTTCCGTAGAAGGCCCTCTTTTCAAACCGTATTTAAA	2	0.19455252918287938	No Hit
GTGCTAGCCAGCACCATTCTGTTTTCATGCCTGATTAGTGGATTGGTGGT	2	0.19455252918287938	No Hit
TTCCTCAACTGTCATACTCCTCTGCATTGTCTCCGAAGAAATAAGACCCT	2	0.19455252918287938	No Hit
GCTCTATGTTGACGATGGTCATTTTGTCAACATCTGTCTCTTATACACAT	2	0.19455252918287938	No Hit
TACTTATGAGGATGTCAAAAATGCAGTTGGGGTCCTCATCGGAGGACTTG	2	0.19455252918287938	No Hit
ATATCAGGTGCAAGATCCCAATGATATTTGCTGCAATGACGAGAGGATCA	2	0.19455252918287938	No Hit
CATATACAACAGGATGGGAACAGTGACCACAGAAGCTGCTTTTGGTCTAG	2	0.19455252918287938	No Hit

Adapter Content

Adapter graph

Kmer Content

No overrepresented Kmers

Summary