HNJM2BCX2_l01_n01_TR_123-7_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HNJM2BCX2_l01_n01_TR_123-7_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2666345
Sequences flagged as poor quality	0
Sequence length	151
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTCATGAATGGGTGGGTGGAAGGGACAGCGGTGGGTGTGTGGGGTGCAGC	4428	0.16607003219763383	No Hit
GTTATGTGTTGGCCTTTGGCTCAAGTCATGAATTTAGGGTCCTGGAATTG	4278	0.16044435360015302	No Hit
ACCCCTTACTTGGATGGACTTGACAGATACACACAGAACCCTCCATCCAA	4187	0.1570314419176813	No Hit
GCAGTGCAGCAACTAAATATGTAGAGCATATATGAACAAACCTAAGAGAA	3789	0.14210464137236553	No Hit
TTACCCACCCAGCATGGAGCAACTAAATATGTAGAGCATATATGAACAAA	3638	0.1364414582509015	No Hit
ACATTCTACTGAACAACCAATTGGGTTCGTGGGCAAACCAAAATAGGAAC	3587	0.13452872752775805	No Hit
CCCTGTGCCATCCCCCACTGCCACCCTGCTGCACCCCACACACCCACCGC	3446	0.12924058964612606	No Hit
CCATCTCAACAGATGCAGAAAAAGCATTTGATAGCGCTGCTACCAAATCA	2886	0.108238056215531	No Hit
GTAGCATGTTGTTTAGTCTCTGTGTTTATGAATTTCCAGTTTTCTTCTTG	2734	0.10253736857008378	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GAGCGAA	690	106.144936	1
GTTACGT	575	68.10091	1
TACGTGT	620	63.150993	3
AGCGAAA	1170	61.97154	2
CGAAAGC	1200	61.02647	4
TTACGTG	650	60.236336	2
GCGAAAG	1370	57.68781	3
ACTCCGA	1055	50.176155	1
GGTTATA	490	45.876743	1
TCCGAGG	1175	45.663795	3
GAGCAAA	7385	45.561127	1
GCGATTA	350	43.494225	145
AGTCGGC	285	43.249607	5
GGTCGTT	185	43.102386	7
AATGGGT	1700	42.214985	7
GTAATGC	345	42.037598	1
GTCGTCT	365	41.70679	145
TATGTGT	1705	39.549107	3
AAGCAGG	10510	39.10756	7
CAGCAAC	1555	38.69261	7