FastQCFastQC Report
Wed 16 Oct 2024
HNJLWDSXC_l04_n02_Sp30_A_3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNJLWDSXC_l04_n02_Sp30_A_3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences121
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACGGTTTACACTCCCACGTCCACCAAAACCACGACGATAGTTCAAGGAA10.8264462809917356No Hit
GCACGACAGTGTTGATGGCTGTGAACTCCTTGGCGCGGTCAGAGAAAGCA10.8264462809917356No Hit
TGTGTCTTCGGTGCTGTACAATAAAACATTTGTTTTGCCACATCTGGAAG10.8264462809917356No Hit
CGTCGCGTCCTGGCATGGCGGCTTGTCCGCGAGCACCGCGCATTCCACGT10.8264462809917356No Hit
CTCTTTGATTTGATTCAGTGTCGGGGGGGGGGGCGGGCGGGCGGGGGGGG10.8264462809917356No Hit
CCTTCTTCCATCGTTCTATTTTCTCTTGTTTCTTCGTTTTCTTCTAATGG10.8264462809917356No Hit
TCGCCCGCTGTTTATTGAGCAGCCGGTGATGGCTGAACAAGCCGAATACT10.8264462809917356No Hit
AAAAACTTTTGGATTGCCGGCTCGTGTCCTGCTCGCGCCAGTCTCGATTG10.8264462809917356No Hit
TTTTAGTATGGTCCGCGTCTTCGGCAAATTCAACAAGGATTTCATAACAT10.8264462809917356No Hit
CGCTTTTCCTGGTTTCAGGACTTGTTTTCCTTTCGCATTCCAATCACACC10.8264462809917356No Hit
AGGAAACAAGATTCGAGAGCGAAGACAAGATGTGACAATATGAGCTACAA10.8264462809917356No Hit
GTTCCATTCGCTTTGACTGCCATCAAGGGAGTTGGTCGTCGTTTCGCCTT10.8264462809917356No Hit
GATAGATATGAGATAGAGGTACCAACTGATAAACAGATCCTGAGTCAACT10.8264462809917356No Hit
CTTTAATGCTTTTTTGTTGTTGTTGCTGTTGTTGAGACATGGTGTCACTC10.8264462809917356No Hit
CGCGGAACACTTTGATGTTTTGGTTGACAACATCCCCACCGACTGTTACG10.8264462809917356No Hit
GCTGAGCCGGTGGTAGTTGGAGTTGCGAACAAAAATCAAAAAGTAGAAAA10.8264462809917356No Hit
GTGGGCGGTGCGAATAGCGGGGGGTTTAATTACCCAAGTTTGAGGCGAGA10.8264462809917356No Hit
CAAACGGTCCTAGAAACCTTCTAATTTCAGCCAGAAGAAGGTGAACCGCA10.8264462809917356No Hit
CTTACAGAACTGTCCTCAGAAACAGAAATGATGTTAACCATACACTTCCT10.8264462809917356No Hit
GGGGGGGGGGGGGGGTGGGTGTGGGTGATTGTTTGGTGGTATGGTGGTGA10.8264462809917356No Hit
CGGTTTTGCGTTTTTTTTTTTGACGGTTTTGCGTTTTTTTCTTTTTGATT10.8264462809917356No Hit
CAAGTCTTAAAACTTGGACTCGCTAAATCAATCAACCACGCCCGTATTTT10.8264462809917356No Hit
CGAAAATCCGCAAGATTCGCGCACAAATGGTCGAATGTATCGAGAAGGAG10.8264462809917356No Hit
CGGACATGGAAGAATTTCAACGGCTTTCCGAGACCTTTCGGTTAAGGAAG10.8264462809917356No Hit
ATTCTTCCAGGAGACCCGCTCGAGGCCGGAACCAAGCCAAACCAAATCGT10.8264462809917356No Hit
CTAAAATTCAACGAGACTCTACCGGCAATATTGGATATTTGAATATGCTT10.8264462809917356No Hit
CCAACGATCAGAAGGATGAGTGCTAGCGGAATCAGTGCTGATGCGACACC10.8264462809917356No Hit
GAGAGGAACAGCGCGTTCAAACATTTGGTTCATGGACTTGGTCGACAGAC10.8264462809917356No Hit
CAGGTTAGAGTCTCGCTCGTTATCTGAATAAACCAGACAAATCACTCCAC10.8264462809917356No Hit
TGCATGTTTACCTTAGAACTGTACATGTGAAGCTGATAAAGGATAGAATG10.8264462809917356No Hit
CAGGATATCAGAGAAATATATTAACATCAGGAACATGTGTTCGACAAAGG10.8264462809917356No Hit
TTAAGACCAGCCTGACCAACATGGTGAAACACTGTCTCTACTAAAAATAC10.8264462809917356No Hit
CCGGGATAGGTATTGATCGCCATGACCACTGGCTGCTAGTTGAGAGCATC10.8264462809917356No Hit
TATTTGCCTGGTTCCAGAAGAGTATGTAGCACAGAACAGGCACCCAACAG10.8264462809917356No Hit
TGGATGGTCAACTTGCACGTGACCTAAAGACCTTTCCAGTCAGCGGTGGC10.8264462809917356No Hit
CCTGAACGGAAGAATCACTCATCGAGATATATATCCATGCCATGAAGGCA10.8264462809917356No Hit
CTTCGCTTCATCTCCCTTGTCTCCCATTGATGCCAACGAATCTGCCGTTG10.8264462809917356No Hit
CTGTCAAGGAAGGACTTGTCTACACCGCTGTCACTCTTGAAGTTATTTTC10.8264462809917356No Hit
CCACTTCGCATGCCTTCAGATTCATCTCAAGCGTTTGAATGACTTCATCT10.8264462809917356No Hit
AATATGTTGAATACGCTTTCTTAAACGTCCGCAACAAGCCATTCCCATGG10.8264462809917356No Hit
CGACCAGTCTATAGCCCAATGATGAGTCCACCAGCATACTACCCAACGGC10.8264462809917356No Hit
GAGATTTGTTAGCTCAAAGAATGAGAACAGTGACGAAAAATTTCCGGCGC10.8264462809917356No Hit
CCTTTACTACAGTAGGCCTCAAAGCAGTCCAAATCTCCAATCGCAGATTC10.8264462809917356No Hit
CCACCATAAAACAACCAATAAAAATAACCACACGAAGAAACACAACAACA10.8264462809917356No Hit
GCAATTAATCGAAGAAAAACAAAAAAAAGAAGATATAAACAAATTTATAC10.8264462809917356No Hit
TGCCAATGAGATGATGTTGGCGACATGCTCGTCATGCTCACCATCGACTG10.8264462809917356No Hit
TTGCTCCAAATCATCCAAGAGCAAAAGGAAATGTAAAATGGTATGAAGAT10.8264462809917356No Hit
GCGGACTCGGTGATTCCGTCTTGACTCAATCGAAATGTGAACCATCCTTC10.8264462809917356No Hit
CAACACTTCAGCAAGATCGAAAAGAGTGGAATGAGATGATGGAACAAGTG10.8264462809917356No Hit
CGCACACCCAGCTCATTGTACCGAATCCGAATTGTTCGACATATGAAATA10.8264462809917356No Hit
CTACACGAATAGCATTTACAACGACGCTATATACTACAACTACGATCCAA10.8264462809917356No Hit
CTTTGATGCAATATTGTGCTGACCAAATCTCTGATCAAGAGTTCTCAACA10.8264462809917356No Hit
TCTTTCTCCTCGCCTCTCTTTCTCTCCCTCTCTCTCACTCTCTCCCTCTC10.8264462809917356No Hit
GAAATAACAATTTATTGATAACAACAACAGTCTTTATTCGTGGTCGCTTC10.8264462809917356No Hit
GCTTCATCTTGCTGGTTTGAGTTCGGGTTCGTCCCGTCAGCTGCCAGCAG10.8264462809917356No Hit
CTTTGTCGAGATTGAGGTTGATTTGCCAAACTGGTTGGACACGTGCACAC10.8264462809917356No Hit
GCATCCAGTAAAGTAAAATGTTATGTGGATTTTCTTCAAAAGAGATTCTT10.8264462809917356No Hit
TTTCAATGGAAACGTCACTTGAGCAGGTCGCAACATCACCGTCGGATCGA10.8264462809917356No Hit
TATAAACCCCACACAAAAAAACATTTTCCTAAATATCCACCACGTAACTC10.8264462809917356No Hit
ACAAAGACAGCCTTATATAACATAGCATATTCAAGGATGCGATTATAACT10.8264462809917356No Hit
GTCACGCCCGCTGCTGGTTCGTTTTTTTTTTTATATACATTAATCTAATC10.8264462809917356No Hit
CCCTAACAGTACCAGCAGTCTACAAAAAAGACTTTGGAATTAGACTAAGA10.8264462809917356No Hit
AAAAAAAATACAATCATACCCAATGACACAGTGAATTTTTAATCCCAAAC10.8264462809917356No Hit
CTGGAGCAGTTCTTGGTGGTGGACAATGATCGCAGCCGCCTCCCTCTCCT10.8264462809917356No Hit
TAATTCCTTCATCTGTTTGGTTATTTTCCAAAATGGCACAAATAACTCTA10.8264462809917356No Hit
GCGGCATCATCGAGTCCCAGATCTTGAAGAAGGGTGTTAATAGTGTTTGA10.8264462809917356No Hit
TGTTGATGAGTTCCCAGCATGCGTTCACATGATGTCTAACGAACGTGAGC10.8264462809917356No Hit
CACACGTCGGAGATAGATCCCTACCGAGCGCGCCAGGTCGCATTCGGCGG10.8264462809917356No Hit
GAGAGACTTCGTTAACTTTCACACCGACGCCAAACACACAGTTATGGTAA10.8264462809917356No Hit
TAACTAAGTAGTTGATATCATATTTCTCCTCTTCCAATTGACACAATCTG10.8264462809917356No Hit
AAAAAAACGTGATTGCCGAAGAAAAGAAGACCGCATCGACGCCATACGAC10.8264462809917356No Hit
AGTACATCATCAAACAAAAAAAAAATCAAAGTTCTTAAAGAACAGAAGAA10.8264462809917356No Hit
GTAACATCCATGTTGCTGTCAACATCATCCTATGCTTCTTCTTCTACCTT10.8264462809917356No Hit
ATTGAGAGCAAGAGGAACGGAAACTGAAGAAACATTACAAAAACGATTAA10.8264462809917356No Hit
CGAGAGGAGCACCGGGGTGCTGTGGTTCCCACGGCGGTGTGACATTAGGG10.8264462809917356No Hit
GGTGGCCATATGGGCTCTTGTGTCACCCCTGCCCCAGGATCCAGGGAGCT10.8264462809917356No Hit
GGAATATCGAAAATATGCATTCTATTCGGCGGGATTGGTTGGCGAGTGTG10.8264462809917356No Hit
ATTTGGATGAGCTCTTCGTCGACTTCGGACTTGAAACTGCAGTTGTCAAC10.8264462809917356No Hit
ACCACATCCTCAGGGTCCCCGATGGTGGGGCTCTCCTGAGAGATGTAATG10.8264462809917356No Hit
TCACATTCGTAATGGAAGCTCATTGTCTTTATCCTCTACCACTCATTCTG10.8264462809917356No Hit
AAAAGATAAGAAAAATCAGAAGAAAAGAGATGACAGTGACGATGAGGAGG10.8264462809917356No Hit
GGTGGCTGCGGACCAGCACCATGTGCAGCTGCACCAGCACCAGCCGCCGC10.8264462809917356No Hit
GGAAGTTCGGGCGGTTGTTGTCCACCATCTCAACCATCATGTGGTGCAGC10.8264462809917356No Hit
CCGAATTATCATTTGTTATCTCTGATCCATAATTAGAAGATGGAATTGAT10.8264462809917356No Hit
TCCATTCAAGGCTGTCCTTGATATCGGACTTGCTCGTACAACCACTGGAT10.8264462809917356No Hit
CGACACTGGATCATCAAACTTGTGGGTCATTGATGCGGCGTGTACCAGTC10.8264462809917356No Hit
CAAAAATTTATTTAAAAAAAAAGAAAAACAATACATAGAAAGTAGATAGA10.8264462809917356No Hit
CGGAATTATTGTTTGTCCGAAGTCCTTGCGATTGAGGCCATTGACCAGAG10.8264462809917356No Hit
CGGACCACCAGGACCACCAGGAGCACCAGGAGATCCGGGAGAGGCCGGAA10.8264462809917356No Hit
GATCGCGGCGTTCGTCGCGGTAGAGGTCGAGACGAAGGTGAAGTTCGCGA10.8264462809917356No Hit
GCCTGGCTATCCTGAGGGAAACTTCGGAAGGAACCAGCTACTAGATGGTT10.8264462809917356No Hit
GCCGATGGAGCATAGTCATCAGCCAGGTCCGGCTGAGCAGCGTCTTCCGG10.8264462809917356No Hit
ATCAACTTGGACTAATCTCACATCGAATCTGAAAAACTTCCTTTACTTGG10.8264462809917356No Hit
GGGAGGGGAGAAATCTATAAAAATGTTAGAAAAAAAGTAGAAGAATCATA10.8264462809917356No Hit
GTTCTGCGTATAGTTTGTCCTATAAGGCTTTCTCTGAGAGCAGCAAGTAT10.8264462809917356No Hit
ATCGACTGGGTGATGGAAGATGACCATGGAACGCGCGCGCGCATGTGTGT10.8264462809917356No Hit
CTTTTAACCTTTTTTCTACTTCCACCTCGGTCATAATCATTAACATCATC10.8264462809917356No Hit
GACCATCGTTTTGTTCGCACTTGTGGCGGCATGCTAATATGAAGTCGTTA10.8264462809917356No Hit
GGAGACTTGGCAGAGTCGGTGGACAGCCTCCTCGACTGCCTAACCGACGG10.8264462809917356No Hit
ATAAAGAAAAATTCAACATCATCAACAATTTATTTCAAATAAAAGTTCAA10.8264462809917356No Hit
GACAAAACCTAGACAAGCACAACGGACTCACAAAAGCCAGCACACCTCCA10.8264462809917356No Hit
CATGTCTTGAGACAGACTCATTGTTCCAAGTACTAGAAGCAATTGTCAAA10.8264462809917356No Hit
TTAGAGAATCTGATCAAATTCAGCATCAACAATCTACGCAATTTAAAACA10.8264462809917356No Hit
ATTTGGACAAGACTTATCTCAGAGACATGCAGAAAAGTATGTTCCTCTGC10.8264462809917356No Hit
AGGGGAAGGATGTAGATATCCGGGTGGATTCTATCCATCACCTGATTGTT10.8264462809917356No Hit
GAATAATACGACAAGAGTAGCATTGTACACCAACTAATAGCAAAACTGAG10.8264462809917356No Hit
GCAATTGTCGCCGAAACATGTGCACCATTCACAGTTTTACCGGCAATCAT10.8264462809917356No Hit
AGGATTGTTATGGATGATCAAAGTTCGAATCGAAGCGTATCGCCGTAATC10.8264462809917356No Hit
GTGTCTAATGGACTTCTTCCTGGACCTAAGCACAGGCCTTCACATTGATC10.8264462809917356No Hit
GTTGAATCTTTTGGCGTGGATGGCGCACAATTTGGTGTCTTCAAAAAGTC10.8264462809917356No Hit
GTCAAGTTCAATGAATGAGAAGAAGGAGGGAATCAAAATGTTGTCCAGTA10.8264462809917356No Hit
GTGAATTCATAAAAGATGAGTTGCTTGCCAATCTCTATCAATGTGGAGAC10.8264462809917356No Hit
TCCACTTGTTCCTTTCTTTCACTTAGAAACTTTTTCAATTCAACTGGATC10.8264462809917356No Hit
ACCTAAAACCATAGAAACCCTAGAAGAAAACCTAGGCAGTACCATTTAGG10.8264462809917356No Hit
GTTCATGGAAAACACGGCTCGGTTCTATTTGTCTGAAATTGTTGTCAGTC10.8264462809917356No Hit
AATCATAGAATTTAGTAGAATAAAATATTTTAGTAATAATACATGTGTTG10.8264462809917356No Hit
CCTCACTCAACACGCCCAAATGTCAGCCATCGAAAACATGAAGCCAACTC10.8264462809917356No Hit
CAAATGCCCACTCATTTTTTCCAAAAAAGTTATTTTGATCTGGAAGCGTC10.8264462809917356No Hit
TTTAACCTTAACAATAAGAAAATAAATTATTCTTGGGATTGCCATATCGT10.8264462809917356No Hit
CCGGCTAAAAAAAAAAGACCTAAAATAAAAAAAAAAAAAAAAAATTTATT10.8264462809917356No Hit
CCGTCTGATAGTTTACAACCGTATGATGAGAAACTGGACACAACTACTGC10.8264462809917356No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)