FastQCFastQC Report
Wed 16 Oct 2024
HNJLWDSXC_l04_n01_horvitzi_A_3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNJLWDSXC_l04_n01_horvitzi_A_3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences83
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACTACCAGGAGACCCAGGAGAGAAAGGAGCTGACGGACTTCCTGGGC11.2048192771084338No Hit
CAACGGTGAATTTAAGCTTTTCTTTCTACAGATCTGACGTTACGGTTGTT11.2048192771084338No Hit
ATTCGATTGCGATAGCGAACAAGTACCGTGAGGGAAAGTTGCAAAGAACT11.2048192771084338No Hit
TGAGCCTTTCTGGATCTTCTTTTTCTGTTTCTTGGATCAATTGAGAGATT11.2048192771084338No Hit
GGAAAGAGAAATTAATATCCTGGAGCGGTACGTGGTGGTGGGCAGTGGTC11.2048192771084338No Hit
TCAAAATCGAATTCTGGCATGCACATGTCGAAAGGACAAGATTACGAGAA11.2048192771084338No Hit
CTTTATTACATGTTATCAAACAGATTATCACAATTTTCAGCAAAATCACA11.2048192771084338No Hit
ATTGAATATGAAGCAGCGAAGAAAAAGCTTGAAGACCTTGAAAATGAAGA11.2048192771084338No Hit
TTGCAATAGCCGCTGGTTTTCCTTTCTCGCCAGAATCACTGACATTTTTA11.2048192771084338No Hit
CGCGAATCTCCATCTCTCTACGTTTTTTCGCTTCTTCTTCGGCTTTGTGC11.2048192771084338No Hit
ACAGGTGGTAACCCCCTAATTTATCAGCATTTGTTTTGAGTTTTTGGTCA11.2048192771084338No Hit
AAGAATTTTCCAAAATTTTGATTCCTATCAACATTGCAGAGAAGCCGATT11.2048192771084338No Hit
TGACATCTCTGGAAGAAGCGTTCACCAAATTGGTGGATATGGATGCTTTG11.2048192771084338No Hit
GTTGGCACCAATTGCTTGCAATGTCCGCACCATGGAGCGTAGAACTCAAC11.2048192771084338No Hit
CAGAGGTGAAGACCATCTTGGCGGTATAGAACATTACGAAGTAAGCGGCA11.2048192771084338No Hit
CAAGGATTGACTCTTCATCCGCCAATCGTTTTGCCATAGCAATGGCGTCA11.2048192771084338No Hit
GATAAATCGAAAGAAAGCGAAGAATCTACTAGTCCTGGCGGAACATTGGT11.2048192771084338No Hit
GTTTTTAGCACACTCTTGTACTGAAACCGAACGCACGTGAAATACTTGCC11.2048192771084338No Hit
GGTATGGATTCGCATTTGTCGACTTCGAAGATGTCAGAGATGCTGAAGAT11.2048192771084338No Hit
AAAGAATTGTCTGGAAAGAGTGACGAAGAATTATTCGCCACATCAACGAG11.2048192771084338No Hit
GCGCGTTCTTCTTTCAAAGCAGATAAACAGCGGGCAAAGACAGCTTCTCC11.2048192771084338No Hit
AAATGCACTAAGACGCTCACGACGGACAATTCCGACCAAGTAGTTGACTG11.2048192771084338No Hit
TCTCAACTTCAGTTGTTGAAACAGTCTCTCCTTTCCAGCGGAATGTATAA11.2048192771084338No Hit
TGGGCAGAAATCAGTGACAGTCAACGTCTGCACAGACCATCTGTCACCTC11.2048192771084338No Hit
ATATAATAAAATTAGTAAAATATAAACTATTAATTACCCCATTTTGATAA11.2048192771084338No Hit
GTCGCGTCTTTCTTGGCGTTCCTTTTCAAGGCGAATCTCCTTTTCGATCG11.2048192771084338No Hit
CTCGAATCTCTCCTTCGTTTCCTGTCACGACTGCCAGATCGGGATCTAGA11.2048192771084338No Hit
CTAATCTTCAAAGTATAATTGCCAATGCGCCGTCCGGTTTCAACATCTTA11.2048192771084338No Hit
CCAAGGTTTTGCTTAAACACCACACTTAATTGCGATAGCACCATCCATGC11.2048192771084338No Hit
TCATGTGTTACGGTCGGGACAACGCCCATCGAATGTGCAATCGCTGTATC11.2048192771084338No Hit
GGCGGCAACAACAGCTTCCTTGATGAGCATCAAAGTTGGGATCTCGGTAC11.2048192771084338No Hit
GGGGAAGAGAAATTAATATCCTGGAGCGGTACGTGGTGGTGGGCAGTGGT11.2048192771084338No Hit
TTTTGTTGCTCTTTCTGGTTCTTTTCGTGTTATCTTTTGTTGTTAAATTT11.2048192771084338No Hit
GGACTGGGTCGTGGAAGAGATGCGCCAACATGGATGGACTGGGTCGTGGA11.2048192771084338No Hit
GCGGTTTCGGCGGTGGACGTGGCGGACAAAGATCTGGTCAAAGGGATTGG11.2048192771084338No Hit
AATCTTCTTCTCGAAAACTTCTTCAACGACAGCTTCGTCAGCCTGTGCTG11.2048192771084338No Hit
AAAGAAGCTTCATTCACATATTGGTTCTTTGGATATGGTTACAAGGAGCA11.2048192771084338No Hit
AGTACTATTTTTTGTTTGTTTGTTTTGTTTTACTATAAAACCATTCTTAT11.2048192771084338No Hit
CTGAGATTCTTATGGGTAAGAACACCATGATCCGCAAGGCTCTCCGTGGA11.2048192771084338No Hit
TGGATAGTGGATCACTACTTTGATGACTACTCGTTTGAAGGCATATCGAA11.2048192771084338No Hit
AGAGCTTTTCCTAAAGGTGATGCTTTGGAATATGGCGACCAAGTCGTTTT11.2048192771084338No Hit
CGCGAGTATGATATGTTTGCTGAGCACACTTGCAGCGATTTTGGCATGCA11.2048192771084338No Hit
AATGGACAAGTTATGGTTCCTGTTGTTGCTAATCCAACTCCGAATGGGGA11.2048192771084338No Hit
TGACGGCTAAGGAGAGGAAAGAAGCTCGCGAAAGGTTTGATGGAAGTAAC11.2048192771084338No Hit
CTCGCCTTGTCAAGGCGAAAATTCCTTGCTTCCCGGTGTCGGGAGGCATC11.2048192771084338No Hit
GTCGTGTGGCGCACTACCATTCGCACCATTTGGTGCCGCTGCAGCAGCCT11.2048192771084338No Hit
GGACAAACATATCATACCAGGATACCTTGGCATTCAATCTGAAATCCATC11.2048192771084338No Hit
TGGCATTTAAACAGTGTTTTAATGAATTTTCGAGCATATGAGGTAGGCTG11.2048192771084338No Hit
CAAAGAGGGAAGCGATGGGATTCTAGTAATGATATTATCTAGTTGGCTTT11.2048192771084338No Hit
GAAGCCCCAAAGGTCGATTCTGCTGTTCAATCCGCTCTTGAAGGACAAAC11.2048192771084338No Hit
ATGCGCTTGGGCATTTTCCTGCTGGCACTCGCCGGCTGTTGTAGTTTCAC11.2048192771084338No Hit
ATTGCTAGGTTTTATGCTGCTGGGCTAATCCCAACGGGTGATACTTTGGA11.2048192771084338No Hit
GGAATTTCGCCTTTTTGCGAAATAAAGTCGCGAAGACTTGAGACGCTGTC11.2048192771084338No Hit
CAGATTTTCACGATAAGCCACATATTGTTCAAAGAGACAACGGAAACGTT11.2048192771084338No Hit
TTTTTTAAAGACATTCATTTAAAAATTAACAACAAAGACAAGGAAGTTAT11.2048192771084338No Hit
GGAAGAACATTTGGTTGTTGGCTGCTATTGGTCTCTCGATGTCCCTTCAC11.2048192771084338No Hit
GCAGGATCCCTTGTTTCCGTCCTTTCCATTCTCTCCAGCGTCTCCTGGAG11.2048192771084338No Hit
CACCGCTCGGATCAATGTTTCTTTAACAATAGATTGTATTTATAGTAGAT11.2048192771084338No Hit
AGCGCGAACAACGCCGACGCGCTGACCCCCGCGCTCCGGGCCGGTCTCGG11.2048192771084338No Hit
CTTTGATTCAATTTTGATATTGAATTGGTTAAATATCATTTTCACTCCTC11.2048192771084338No Hit
CCGAACAGTAAATATTCTCTTCTTAAAATCGTATTGAATGGCTCATATCC11.2048192771084338No Hit
TCGGAAATGAGCAGCAAATATTTTAAGCCATTTTTCTTAGATTCTGCGAA11.2048192771084338No Hit
AGTGGCTTGATCTCAGCCCACTGCAACCTCTGCCTCCTGAGTTCAACTGA11.2048192771084338No Hit
AGGAAGAAGAAACAGAACATTAAATGAATGACAAAACTGAAAATGATAAT11.2048192771084338No Hit
TTTGAGACATAATGCCATCAGATGTCTCGGACAAAACGCAAAACTCTCGA11.2048192771084338No Hit
TTTATACTCATGATGTTGATGAAAAACGGACGAAACAAGTTGAGGAGGAA11.2048192771084338No Hit
CGGCAACAACAGCTTCCTTGATGAGCATCAAAGTTGGGATCTCGGTACCA11.2048192771084338No Hit
GTAACATCGAAAGGACCTTGTTTCTAGTGTCTACCATTCCAATTTCTTCT11.2048192771084338No Hit
CTTCTATGTAGTTCTTATCTTTGAAAACTCTGGTCGTCACCTTGTGTGGG11.2048192771084338No Hit
TGCCACACCGCCCACATCGCCTGCAAGTTCGCTGAACTTAAGGAGAAGGT11.2048192771084338No Hit
GCGCTTGCGAGTTGGGCACTTGCAGTATCCAGCATCTTCTCCAGGTTGTC11.2048192771084338No Hit
GATTTATGAAGGGAATGAACAACTAATTTAAATCAAAACTACTCGTGTAA11.2048192771084338No Hit
ATTTGTTCGTCTCACATCGACAATACGTGGCATTCCGATTCCTGTCATTC11.2048192771084338No Hit
CGGATGGTGACCGAAGAAAACAAGAAGTTGTTGGAATCGGAGAAGCAAAA11.2048192771084338No Hit
GGAGGATATAGTCTTGAACCAAATATCTAATAGAAGTTATTGGATCTTTG11.2048192771084338No Hit
GCTGACTGCTGCTCTTGCGGAGTTGGGGAGGCTGGACCGCAAGGACCACC11.2048192771084338No Hit
GACAAAGACCAGTTCTCCATCCTCCCAAGATAACACCGAAAATGAACGTT11.2048192771084338No Hit
CTTCCAAGTCTTTCTTAATCAAAGCAACCTTTGATGGTGGGACGACCAAA11.2048192771084338No Hit
GTGGATGTTGACCAGTGCATTCGGAGGCTGCTTGACAATGATCCAACGTT11.2048192771084338No Hit
GGCGGTTCGAGCACAAGCTGCTAGAATGATTGGGAAAACTGCTGATGAGG11.2048192771084338No Hit
GGTGCGAGTCCCGTCATGGATAACGGTATCGTCGGTTTGGCGCTTCTTGG11.2048192771084338No Hit
TTTTTTCTGACATTCGCGTGAACAATAATTCGCCATTTTACAAGCACTGC11.2048192771084338No Hit
CACTATTCAACTTTATGACAAGTGTTATAGACTACGTTTCGACCAACACG11.2048192771084338No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)