FastQCFastQC Report
Wed 16 Oct 2024
HNJLWDSXC_l04_n01_F2C_3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNJLWDSXC_l04_n01_F2C_3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38459673
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGGATTCCCTGAGTCCGTACCGGTTCCAGTACGGTTGTTTAGATGAGC1424960.37050757035817755No Hit
CTCACCCGGTCCGGACACCATTAGGACTGACAGATTGAAAGCTCTTTCTC814270.21172046886618096No Hit
GCACGTCAGAACCGATACGGACTTCCACCAGAGTTTCCTCTGGCTTCATC779250.20261482722435004No Hit
CTCGAATTGGCCGACGTGGGATCTGTGTTCTTCGGAGTGCAGCGCACCAC743290.19326477372805537No Hit
GTCGGAAACGTCGTCGACTTTCACACCGACGTCACACACACTAGCGTAAC731560.19021482579948093No Hit
CTCCGGTTCCACTCCAGCGATTTCACGTTCTCTTGAACTCTCTCTTCAAA671910.1747050735454771No Hit
GGGAAACTTCGGAAGGAACCAGCTACTAGATGGTTCGATTAGTCTTTCGC668090.17371182537095414No Hit
GCCGCAAGCTCCACGCCTTGTGGTGCCCTTCCGTCAATTTCTTTAAGTTT659310.17142891464521812No Hit
CGGCAAACTAGATCCGTAACTTCGGGAAAAGGATTGGCTCCAGTGGTTGG635830.16532381853584663No Hit
GTGGGATCTGTGTTCTTCGGAGTGCAGCGCACCACGGCCCTGTGCGTGTC583390.1516887572081021No Hit
CGCCCCTATACCCAAGTCTATCGATCGATTTGCACGTCAGAACCGATACG573420.14909643147511942No Hit
GGCGTTCAGTTATAATCTCTCAAATGGTAGCTTCAGACCATTGATCTGTC559430.14545885504538741No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT547160.14226850030680188No Hit
CTGAGATCCAGCTATCCTGAGGGAAACTTCGGAAGGAACCAGCTACTAGA535640.1392731550265651No Hit
CGGAAACGTCGTCGACTTTCACACCGACGTCACACACACTAGCGTAACTA525480.13663142689746738No Hit
GGGAAGTCGGCAAACTAGATCCGTAACTTCGGGAAAAGGATTGGCTCCAG502240.1305887338147675No Hit
AGAAGACCCTGTTGAGCTTGACTCTAGTTTGACATTGTGAAGAGTCATGA499620.12990750077360252No Hit
CCGCGCTTGTGCTCCGAAGAACACAATCTTTGCATCTCAGTTAGGGAATA491910.12790280354177738No Hit
CCCGGACATGGAAGAATTTCAACGGTTTACCGATACCTTTCGGCATAGGA474640.12341238574753352No Hit
GTCAGAACCGATACGGACTTCCACCAGAGTTTCCTCTGGCTTCATCCTGC445850.11592662267305288No Hit
CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCA444600.11560160690913832No Hit
CCCTGAGTCCGTACCGGTTCCAGTACGGTTGTTTAGATGAGCGATCAGGA415720.10809244269965582No Hit
GTCGATCCTAAGGTACTGGCGAACGCCTTGTATCATCGGTGGCGAAAAGC403160.10482668430384212No Hit
CTTGTCTACTGCGAGTCAAAGGGTGTTAAAACCTTGCGGCGAAATGAAAG387620.10078608832685602No Hit
GTTCGATTAGTCTTTCGCCCCTATACCCAAGTCTATCGATCGATTTGCAC386140.10040126966238117No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)