FastQCFastQC Report
Wed 16 Oct 2024
HNJLWDSXC_l04_n01_F1A_3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNJLWDSXC_l04_n01_F1A_3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26615893
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATTACTCGATCTCGTAT786100.29534984980590356TruSeq Adapter, Index 27 (97% over 39bp)
GTCGGATTCCCTGAGTCCGTACCGGTTCCAGTACGGTTGTTTAGATGAGC393730.147930411352345No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)