FastQCFastQC Report
Wed 16 Oct 2024
HNJLWDSXC_l01_n02_WN2212_POOLRET79.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNJLWDSXC_l01_n02_WN2212_POOLRET79.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGGATATGTATTGGGGGTATGCCTGAAAAAAAAACTTTTTTTTTTGAA39.090909090909092No Hit
TTTTTGAAAATCGAAACGCTTTGCTTCACTTTTTGCTTCGTGTGCTTTCC26.0606060606060606No Hit
TAAATGACGCTCATATAGAGTAATAAAAGCAATTCTTTGAACAATAAAAA26.0606060606060606No Hit
ATTTCTTTTTTTGTTGCGTGTTCTTACGTTGATTATATGAAAAAGCTAAA26.0606060606060606No Hit
ACTAAATAATTCAAAAGCGTAGTCCAACTGAGTCGTTGTGGAAGGGACTG26.0606060606060606No Hit
TGTAAAGGAGGATATTTTAAGTCAAAATAATCAGATCATAAGGAGGAGCC26.0606060606060606No Hit
GATTTAAAAAAAATAATTATGTAATTGCAGAGATATCTACTTAGCATTTG26.0606060606060606No Hit
GTGAGGAGAATGCTTCGAGAATTGAATTCTTCCATTCTAATGGCATATCA13.0303030303030303No Hit
CCTCCTGATGGTCTGATCCTTCAGGAGGTACCCTTACGATCCTTCTTATC13.0303030303030303No Hit
CTTACGGAAAGCAGTTGGACAGAGAAACTCGAAGACGATGGCATCGAAAT13.0303030303030303No Hit
TGAAAATTTGAAAACTATCTTGAAATCAAACAAAAAATCAAAACTTACTG13.0303030303030303No Hit
CCAAAGCCGGCTGTTCAACAAGCTCCGACCCGAGCTGCTCCGGCTCCGCC13.0303030303030303No Hit
CACAAATGCGGGATGAGGATTTTATCTCGATTAACAAAGCTTGTAAAGCG13.0303030303030303No Hit
TAATAAAGTTCAACTTTAGATTTAATTCTTGATTACAAAATTGGGTTATT13.0303030303030303No Hit
AGCAAAGGACGATTTTGGAGATGGACAGTGTTTTTTGAAAGATTTTTTAG13.0303030303030303No Hit
GCCGCCACACACACACTCACAAAAAAATCAATCAAATCACCCATATCAGT13.0303030303030303No Hit
TCGATTATGCTCATTTTTGCTGGAATTTTTCGACTTTCCAGCTTTTTACC13.0303030303030303No Hit
ATTTGATAAAAAAAATTCCAGATGTTCGACGAGAAGAAGCCATAAGATCG13.0303030303030303No Hit
TATCTTTATGTATTATGCAAAGTGACATCATTTTTTATATAAAAAACCGA13.0303030303030303No Hit
CGACTGTGTCGATTTCATCGCTACTTTGGAATGCGTTAATCAATCCCCAG13.0303030303030303No Hit
CAAAAACACAATTATTTTCATACAGTTTATTGGCTATAAAAGTTCAACTA13.0303030303030303No Hit
CTCCGGTATGAAAATCAGGGGGACGAGGGGGACGTCCCCCATAACAGCCC13.0303030303030303No Hit
ATTTTATCAAAAAGTTGAATAGTTGAAAAATAAGAAAATGATGGAAATTA13.0303030303030303No Hit
TGCAAAAATTACAATTTTCTCTTCAGAGTGGTATATCTTAGACTGCATGA13.0303030303030303No Hit
GATGTATGTAGATAAATCAGCGCGATTGTATTGAACCGAAAGTGACAAAT13.0303030303030303No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)