FastQCFastQC Report
Wed 16 Oct 2024
HNJLWDSXC_l01_n02_WN2196_POOLRET79.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNJLWDSXC_l01_n02_WN2196_POOLRET79.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTAGACACCTTCGTGTGTCCCCTGCGCCACTTAACCGGCGATTTCCCAT26.25No Hit
GAAAAATTCCAGAATATGGATTTCCAGATGTCTAAATGATTTTGAACTGT26.25No Hit
ACTCAAAAATACTAGTTTCCAATAAGTTGCAACTGAATACTTATTTGACA26.25No Hit
CAAACATTTCAAAACGGTCATAAATACATGTTCACTTCCTTATCACTATT26.25No Hit
ATCGATGCACCATGTTTTGCGGTAGCCTTTTTAGCTATAGTTCAACTAAG26.25No Hit
TTTAAAATTATTACGGGTACACAATATTCTGAGAATGCTTATTGCGCAAA13.125No Hit
ATTGGCGGAAATCCAAATAGGACTTAGGTGAAAACTGAGATTTCCAATTT13.125No Hit
GTTCAAAAAAATCAGGAAATATTACAGCGTTGAGCGTAGAGCTTTGCCGT13.125No Hit
AACAGGCGAAAGAGTGCAAAAATCGGTTCGAAAATGCACAAATCTCGCAT13.125No Hit
GTCTCGTTAGGAATTGTCAGCAAAACCGTAAATTGAAACTTTCAATTAGT13.125No Hit
GCAAAACTTTATCACAATATTCAAGATTTCAATTTTATATATAGTGAAAT13.125No Hit
AAAGTTTTCGAGTTGAAAACATATTTATTTTGGTCTTCATCTATTCAAAT13.125No Hit
AAATTTTTTCCAAACTTTAATTTTTTTTCGAAATTTCGGAATATTCGAAA13.125No Hit
TTCAAAAAATGCACCAGAGTGATTTGCCATTTGGAGGAGTTTTGATGATC13.125No Hit
GAAAAATGTCGATCAGAAATTGTTTCAAGCTATTTTTCAAAGTTTTTTAA13.125No Hit
TTGAAAAATAATGTAATGTATTGAATTTGAGAAGCTCCATTCATTGGTTA13.125No Hit
ACTGAACGTATGTACATGTTATGTGAGAGATCTGGGGATATTATGCAGGC13.125No Hit
CGTGGGTGTTTTGTCAGCCGGAATGCCTTGTCCAGAACTCTACGATACCC13.125No Hit
CTTTACTCGAAGAAGTGGTGACCTGGACATATTTACCCTAAGGATTGGTT13.125No Hit
ATAATTGAAGCTTGAAGTTATTATTTTCATAAAAAATCTTATCCTCTATC13.125No Hit
TGTATATTTATTTAGTTTATGTAGTATCCAGAAGATCACGAAGAAAACTG13.125No Hit
ATTTGAAACTGTTTCAATTTTTTTGGAATTTTTGGATTTAAAAAATAATT13.125No Hit
TTCTGCGATGGCCCGAACCCGGGTATGCCGGCTGAAAATTAAAAGATCGG13.125No Hit
TATTTTTAGACTTTTGAAATGAAATAGTTTTTGAGATGACATAAATTCGC13.125No Hit
CATTTTTGAACTTTCGGCACACTTTTCGAAGCGGCATTCTGAAATAAGAA13.125No Hit
ACTTTTTATAGAACCTATAATAGGCGGCGCCAACCGTGGGCAGCAGATCG13.125No Hit
CGCAAAATTTCTAAAACAGCGTATGACTACACATTTTTTCAATAAAAATA13.125No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)