FastQCFastQC Report
Wed 16 Oct 2024
HNJLWDSXC_l01_n02_JU4360_POOLRET79.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNJLWDSXC_l01_n02_JU4360_POOLRET79.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGAATTCAACAAAAAATTTGGATTTTTATTGAAATTGTACGGAAACGAG26.25No Hit
TTTGCGTCATTGTGATACCTTTCTTCTCCTTTTTTATAGCTATACGAATA26.25No Hit
AAACCCCGCATTTTGTATGATGCCACCGTTGACCAAGGTATTTCATTTGA26.25No Hit
TTACTGAGAGCTTTGATTTAAGTATAATCATGACTTACTTTGAAAAAAAA13.125No Hit
CCTAAAAATATCATTGTAGCTGTCAGATTATCCCTGGTCTTCCAAGAAAA13.125No Hit
GAGGAATTGGAGAAAGATTGCATGAAATTAAATCAGATTTTGTTAAAAGA13.125No Hit
GAATACGTCAATGAGGGGCTCAGAGTTTTCAAACTTTTAGATCGGAAGAG13.125No Hit
AAAAAAAGCAAGCTTTTTCAGGAGTTATTTCGTTCTTTTTTAAACATTTT13.125No Hit
ATATTTTTTGGAAAAAAAGTGTCTTACCACCAACACGCCGCCGGAATTGA13.125No Hit
ATATTTCTTGATCCCTCCCTACCACCTACCTTCTGCACTTGAGAACAGGT13.125No Hit
CCGGGATGCCCTGGCTGTCCTGGTGCTCCGGCGTCTCCGGTAGGTCCTGT13.125No Hit
AAAACGGCTTCAAGCTATTTTTGAACAATTTTTTGGTTTTTAAAATTTTA13.125No Hit
ATTTTCTGTCGCTCTGCCGTGACTCCAGTTTATCTGAGATGTAGTTGAAA13.125No Hit
GTTTTAATATATATATATATTAAAACATTTATTCTAAGTTATTTCCACCT13.125No Hit
TTTAATAGACTTTTCAAAAAAACAATTTTTTTTTGTCTTTTGACACTTTT13.125No Hit
TATAGACGTACTTGATATATTATGTTTCTGACCTGAATCAAAAGTTTTAA13.125No Hit
TTAATTATTCAAATTTATCTAGAGATGTTTTTTGCTCAGCAATTCCCCGT13.125No Hit
CGGGAATTTCTAAAAAAGTTAGTTTGAAGCCAGAAATTAATTTTCAAAGT13.125No Hit
TTTCATTTTTTTCTCTTATTTTCCTTCGAGAAGACCTCACATCCATGTTT13.125No Hit
ATTTAAACATCATTCCAAGATTTGGCAAATGAATTTGTGTTCTTTTTTCA13.125No Hit
ATGTAGCGCCTCTGTAGTTGCTATTTTTGGTAGATCGGAAGAGCGTCGTG13.125No Hit
TAGCAAATCCATGGTTCGATCAGTCTTGAAAACAGCATACAATTTAGGCA13.125No Hit
TGAACAGAAATTGGATTTTTTGTTAATTTTTAGAGGAAAAACTGTTTTTT13.125No Hit
GTGCAATTGTATGATATATCAACGTACTTTCAGCTGAAAAATTGAAATCA13.125No Hit
GCATTAAAAGTGGAGTATCTTCAGTGGCGAAAAGCTTTTTTTTTAGAATA13.125No Hit
TGTACATACCAAACCCTCTTTCTCTAATACACACACTCGTTGGGGAGCTC13.125No Hit
CCAGCAGCAACTGCTCCTGTTACTGAAACAGTCACTGTTGCAGATCGGAA13.125No Hit
TTTTTCGTGTTTTTACATTCTCACCGATCTTACTTTTATCTTCATTTCTA13.125No Hit
GGCCGACACTTCTTGGGTTCCGCGCCACACTACACAGGAAGCACGGCTCG13.125No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)