FastQCFastQC Report
Wed 16 Oct 2024
HNJLWDSXC_l01_n01_WN2212_POOLRET79.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNJLWDSXC_l01_n01_WN2212_POOLRET79.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33
Sequences flagged as poor quality0
Sequence length151
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTGAAATTTTCTTCCCATTTTCTTAAGATATTTTTATCGAATTTGCT39.090909090909092No Hit
TACAATTTTCCATGGATTTTCGGCTATAGCTCCCTCACAATTGAATATAT26.0606060606060606No Hit
GGTACCCCATGTGTAATTACTACCAGTCCCTTCCACAACGACTCAGTTGG26.0606060606060606No Hit
GCAACTACAACTACCTGCAAGAAAGCTTTTTAGCTTTTTCATATAATCAA26.0606060606060606No Hit
GAGGAAGTGATTATTTTGCTGTCCATTCAGGAAATGGAAATCAGGAATGT26.0606060606060606No Hit
TTTAAGTTAAAACGTTAGATTGTAAATCTAAAGATTATTGCTCTTGATAA26.0606060606060606No Hit
CGAGAGCGAAATTTGCAGTTCGGAAATCCACAAGTCGTCGGCATTGCGGG26.0606060606060606No Hit
ATCAATTATTTTTACACATTTTTGTAGTTGTTCATAAATAGAAATCTGTC13.0303030303030303No Hit
ATCTGAAATTTTCTTGGTTTTTATTGAGGAAATTGGCTTAAATAAGCTTA13.0303030303030303No Hit
GAAATATAGATAATTCTCACGAGCATTCTGTACAGTAGCCTTAGAGAACA13.0303030303030303No Hit
TGGGGCCTGGGCTTGTTGAACAGCCGGCTTAGGAGGATTCTGTTGAACTG13.0303030303030303No Hit
GATACTCCAAACGATGATCGCAATTACTGTATGAGCTTGTGCCATATGCG13.0303030303030303No Hit
GAAAAAAATTCTTGTAGTTTTCCGTATTTTAAGCCTCCTGGATGGATGCA13.0303030303030303No Hit
AAAAATGTATTAAATTTTTCTAAATTTTAAATGGTTTTTTTTTAAATTTT13.0303030303030303No Hit
ACATGGATCCTATTTCACAGTAAGTTTTGATTTTTTGTTTGATTTCAAGA13.0303030303030303No Hit
CGACTTTTTGATACAATCTGCAACAAAAAAAAACAGTTTTTTAAACAAAT13.0303030303030303No Hit
ACAGCGATCCAATTTGTTCCTGCAGTTAGAACATTCGTCAAAATGTTTGT13.0303030303030303No Hit
ATCTGCGCTGATTTTAATCTCCCCTTTCGCTTTACAAGCTTTGTTAATCG13.0303030303030303No Hit
CTCCTGAAATAAAATAGTTTCAGGAGTTCAAAAAAATCTCGGAGACCGGA13.0303030303030303No Hit
AAGAAGAAGAGAATATCAGTCGAATGGTGACTGAAACCATACAATTCCTG13.0303030303030303No Hit
ACACACGAGTAATGCGGAAATGCTTCTTCTCCTCCTTTTGATTTTCGCGC13.0303030303030303No Hit
CTGTGATCAAGAGTTGGTTTTTTTCACGAATTTTCAAAAACGAACTTCTG13.0303030303030303No Hit
CACGAGGCTCTTCCTGATGTTCTGATCCTTCAGCTCCGAAGAATCACATG13.0303030303030303No Hit
CTACAATGTCCTAAAAAATCTTTCAAAAAACACTGTCCATCTCCAAAATC13.0303030303030303No Hit
TATGGCTTCTTCTCGTCGAACATCTGGAATTTTTTTTATCAAATAGATCG13.0303030303030303No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)