FastQCFastQC Report
Wed 16 Oct 2024
HNJLWDSXC_l01_n01_WN2196_POOLRET79.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNJLWDSXC_l01_n01_WN2196_POOLRET79.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTTAATTATGTACGCCATAGAAAAAGTAAGATATTACCTCTCCATCTGC26.25No Hit
ATGTTTAAGAACATTTTAAAGCGCCTCACTATTATAGTAAGCTTTCTAGA26.25No Hit
TCTGAATTGTGATAGCAATAGTGATAAGGAAGTGAACATGTATTTATGAC26.25No Hit
CAAACTTTCTTAGAAAATGTCGTCACACACACACCCTCACCTCCTCTTCT26.25No Hit
ATCTGGAAATCCATTTTCTCGAACGTTCCTAAAAAAATGTTGGATGGCCT26.25No Hit
AACGAAATGAAATGTTTGAATCTTAAACTTTCAACTGCACATTCCACAGC13.125No Hit
CCTAAATTACAAATAATTATCCAAATGCCTTTCTTATTTCAGAATGCCGC13.125No Hit
AACTAAGCCAGTTTTCTTCGTGATCTTCTGGATACTACATAAACTAAATA13.125No Hit
AATTCCTTTCGAACTTTCGGAGCCCGTAAATAGAAACAAGACCTACAGTA13.125No Hit
CTCATTTTACCAATTAACCCTGTTTATGTTTCATTATTCTTGCATTAACA13.125No Hit
CTCGTCTATTGAAATTTTCAATGCTCTCGTGCTCCTGGAAAAACATACAT13.125No Hit
TTGGAGTTCCGCGATCACGTTTTCCACCTCGTTTCCGCTTTCCAAAATTG13.125No Hit
TATTTTGTTAAAAATTAAACTATAATTATAAAATTATTCATTTTATCCTC13.125No Hit
TTGAAATATTGAAAATTTCTAATTTAGTTTTCTATTTAAAGTAAAATTGA13.125No Hit
GGCATTCAAAAAAAACCAATCATTAGGGTAAATATGTCCAGGTCACCACT13.125No Hit
ATACCTATATGCCTGCCATACGTGCCTGCATAATATCCCCAGATCTCTCA13.125No Hit
GAAATTTCAAGGCTGAAATTTTTTTTTAATTTCAAACTTACATGAAATGT13.125No Hit
TCTGGCACGATCGGCAATATTTGTCGCCAGTCACCTCCCATGATCATCAA13.125No Hit
CTTTCAAAGAAGGAAAAGAAAACCAGTTTAATTTTGTTCGTTAACTTAAA13.125No Hit
TTTCTAAATTTTCAGAGTATCCAAGCATCACCGAATACTGTTCCATGGGA13.125No Hit
CTTTCAGTAAGCGAATTTATGTCATCTCAAAAACTATTTCATTTCAAAAG13.125No Hit
GCCGAAACTAATTGAAAGTTTCAATTTACGGTTTTGCTGACAATTCCTAA13.125No Hit
CAAATCAACAAGCGGAAATTTCTCAGCTAGTTTGTCGGTTTCCCAGAATC13.125No Hit
GCTGCCCACGGTTGGCGCCGCCTATTATAGGTTCTATAAAAAGTAGATCG13.125No Hit
ATGACCGAATATCTTGATAAAAAAATTTAAAAAAAATTTCTAGATTTTAT13.125No Hit
TTTAATTTTCAGCCGGCATACCCGGGTTCGGGCCATCGCAGAAAGATCGG13.125No Hit
TAAAGAAAATTTCTACTTTGCCCCAGTCTTTTTTGTGTCTTTTTTTTTGA13.125No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)