FastQCFastQC Report
Wed 16 Oct 2024
HNJLWDSXC_l01_n01_JU4360_POOLRET79.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNJLWDSXC_l01_n01_JU4360_POOLRET79.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACTCGCTTCGCGAGCACCTCGATCTAAAATTTTCAAAAGAAATTTTAAG26.25No Hit
GTTCAAATTTCCAGACTTCCGCTAATGAATGAGCCTCGTTTCCGTACAAT26.25No Hit
GTTTTATTTGATTAAATAATGTTCAAAAGCTGAAACATTTTGAGAAAAAT13.125No Hit
TGAGGATTTGTATGTTAATGCTAATAAGTGCCCACCCACCCAGCTTAGGT13.125No Hit
ATACCATAAGTGTGAGCATTTTACATTAAGTATTACACTAACTGATTTCA13.125No Hit
TTTTGGAAATGTTTTTTACTAATTCAGTTTAACAGATCAGAAATCAATAA13.125No Hit
GTTTTCTTGAGAAAATTTATGGAAAAACAAGAAAAAATTATATAGATCTG13.125No Hit
AAAAAAAATTGAATTTCTGATATTTATTACAAAAATCGGCAATTTTCAGC13.125No Hit
CAAAACTGAGTGATCGCCATTTTAGGACCAGTTATTCTAAAAAAAAAGCT13.125No Hit
ATCATGACGTAACGATATCCGCCAAATAATTTTTTTGCTTTGTTTGCAAT13.125No Hit
GCTGGACCAACAGGACCTACCGGAGACGCCGGAGCACCAGGACAGCCAGG13.125No Hit
CCCGAATAAAAACTGATATTATTTTGAACGATTACATCAACACCGTACAC13.125No Hit
ATATTTTTTGGAAAAAGACGAGCCCGCTTCAAAATTCCATTCAATTCCGG13.125No Hit
GAAAAAACAGTTTTTCCTCTAAAAATTAACAAAAAATCCAATTTCTGTTC13.125No Hit
CCCGAATAAAAACTGATATTATTTTGAACGATTACATCAACACCGTACAA13.125No Hit
ATTTTATGTTCTTTCAGAATTTGAAAACAGAATTTTAAAAAATTTCGAAA13.125No Hit
AAAAGTTTGAAAACTCTGAGCCCCTCATTGACGTATTCAGATCGGAAGAG13.125No Hit
ACCAAAAATAGCAACTACAGAGGCGCTACATAGATCGGAAGAGCACACGT13.125No Hit
CCCGCTTACATTTGATGATATTCTAATCAAAGCTTTGCATGTTCTTTCAA13.125No Hit
GCGAGCCGTGCTTCCTGTGTAGTGTGGCGCGGAACCCAAGAAGTGTCGGC13.125No Hit
AAAATCAAAATTTAAAATTTTTTGACATTTTTTGTCTTTAATTTCTTACG13.125No Hit
GCATTTCAAGTATTTAAATTAAAACTTTTGATTCAGGTCAGAAACATAAT13.125No Hit
TTTAACAAAATCTGATTTAATTTCATGCAATCTTTCTCCAATTCCTCAGA13.125No Hit
GCAACAGTGACTGTTTCAGTAACAGGAGCAGTTGCTGCTGGAGATCGGAA13.125No Hit
GGAATAAAAATATATTAATCAATTAATACCCTTTTGGAATCTTTTAGTAA13.125No Hit
TTTTTTTCAAAGTAAGTCATGATTATACTTAAATCAAAGCTCTCAGTAAA13.125No Hit
GGGACGAAAAAATGATTGGTCAGCGGTCTACGGCAGGGAAACGGAACATA13.125No Hit
CCATCCACTTCATTTGGACGATCATCGTCCATCACCGGCCAAGAAAAAGA13.125No Hit
TGTACATACCAAATCATCGGTTATTGATTGAACACAGTGGCTCTCTCTCT13.125No Hit
TATTTCAACAACCATAATAGCTATTAAAAAGTTTTCAACTACATCTCAGA13.125No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)