FastQCFastQC Report
Mon 31 Aug 2020
HNJLTDRXX_l02_n02_JK06-1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNJLTDRXX_l02_n02_JK06-1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences222596129
Sequences flagged as poor quality0
Sequence length151
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCAAC3813750.044.1049651
GATCACG1513250.041.0159531
GATCGTG1830600.039.352251
GATCATG2737800.038.929281
GATCGCG650750.036.85551
GATCCAC2457800.035.855871
GATCCTG1877300.033.2669261
GATCCGA2130150.033.1438561
GATCACA3927400.032.582971
GATCCGG1280400.032.0616231
GATCGCA1398450.031.4360031
GATCCAG2495950.031.2984751
GATCCCA1805150.031.1554071
GATCCAA4131000.030.8875051
GATCCTA1586850.029.4643761
GATCCCG1091150.029.2094151
GATCCAT3866900.028.6000651
GATCATA3398250.028.2819161
GATCGTT2862400.027.5096111
GATCATT6070850.026.8356321
Produced by FastQC (version 0.11.5)