FastQCFastQC Report
Mon 31 Aug 2020
HNJLTDRXX_l02_n02_DJ60-1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNJLTDRXX_l02_n02_DJ60-1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences338598650
Sequences flagged as poor quality0
Sequence length151
%GC36

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCAAC4643350.040.537071
GATCACG1771600.038.7459951
GATCCAC2937250.036.86911
GATCGCG775650.033.690281
GATCCGC1242900.032.2467651
GATCATG3298450.031.7668761
GATCCAG2969900.031.3129561
GATCGTG2123300.031.1217211
GATCCTG2276150.030.7757571
GATCCGG1532050.030.5089781
GATCACA4438500.029.643731
GATCCGA2567100.029.371091
GATCGCA1673400.029.3629971
GATCCCG1354100.029.3092371
GATCCCA2278900.028.9967731
GATCCAT4363800.027.663381
GATCGTC2649300.027.4024771
GATCACC2138400.027.2504631
GATCCAA5252850.027.0305181
GATCGCC1258150.026.5552371
Produced by FastQC (version 0.11.5)