FastQCFastQC Report
Mon 31 Aug 2020
HNJLTDRXX_l02_n02_DJ59-1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNJLTDRXX_l02_n02_DJ59-1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences199868191
Sequences flagged as poor quality0
Sequence length151
%GC36

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCCGC574250.065.384051
GATCCGG623500.060.7431341
GATCCCG658450.059.5578351
GATCGCG394300.056.7404941
GATCTGC1006650.055.515591
GATCCAG1191150.055.48241
GATCACG837500.053.921421
GATCAGC1124850.053.4560281
GATCCTG1038300.051.7755241
GATCGCC580000.050.7226681
GATCTCG1073150.050.134711
GATCTGG970050.049.9572641
GATCCGA1148700.049.6486051
GATCGGC795200.048.6130261
GATCCGT843750.048.3185921
GATCCAC1306300.047.458481
GATCTTG1553700.047.4259871
GATCGTG1048500.046.973811
GATCTCC1205850.046.103991
GATCACC945600.045.3551251
Produced by FastQC (version 0.11.5)