FastQCFastQC Report
Mon 31 Aug 2020
HNJLTDRXX_l01_n02_JK06-1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNJLTDRXX_l01_n02_JK06-1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences222215701
Sequences flagged as poor quality0
Sequence length151
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCAAC3813000.044.432141
GATCACG1519750.041.446351
GATCGTG1811750.039.3570981
GATCATG2740200.038.5839271
GATCCAC2455100.035.827971
GATCGCG660300.035.776551
GATCCTG1896450.032.94581
GATCCGA2125100.032.8161471
GATCACA3896500.032.3101121
GATCCGG1271400.031.9664631
GATCCAG2499100.031.5235391
GATCCAA4148200.031.3766271
GATCGCA1400650.031.213621
GATCCCA1819550.030.8162271
GATCCCG1090600.030.005681
GATCCTA1589750.029.0712031
GATCCAT3865550.028.7894231
GATCATA3358650.027.704221
GATCGTT2862550.027.4069921
GATCATT6078400.027.0461861
Produced by FastQC (version 0.11.5)