FastQCFastQC Report
Mon 31 Aug 2020
HNJLTDRXX_l01_n02_DJ60-1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNJLTDRXX_l01_n02_DJ60-1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences339353898
Sequences flagged as poor quality0
Sequence length151
%GC36

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCAAC4632950.040.711731
GATCACG1783300.038.4831541
GATCCAC2955850.037.494941
GATCGCG798450.034.567361
GATCCGC1255300.032.1682321
GATCATG3297400.031.8767831
GATCGTG2151650.031.8039911
GATCCAG2992800.031.2193181
GATCCTG2340000.031.0118961
GATCCGG1552600.030.626821
GATCCGA2586950.029.9704191
GATCACA4422850.029.7661511
GATCCCG1350350.029.5922161
GATCGCA1665900.028.9228691
GATCCCA2271750.028.6754281
GATCACC2140800.028.0835271
GATCGTC2667450.027.6946871
GATCCAT4358050.027.6857971
GATCGCC1256300.026.9260941
GATCCAA5243450.026.8448051
Produced by FastQC (version 0.11.5)