HNJJKAFXX_n02_131.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HNJJKAFXX_n02_131.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	6515576
Sequences flagged as poor quality	0
Sequence length	75
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAGGGGGGG	150127	2.3041247619550442	Illumina Single End PCR Primer 1 (100% over 58bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	23805	0.36535526559739306	No Hit
AGGTCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAGGGGGGG	12293	0.18867096324254373	Illumina Single End PCR Primer 1 (98% over 58bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AAAGGGG	25340	53.55964	66
AAGGGGG	25420	53.445385	67
AGGGGGG	26380	51.82787	68
AAAAGGG	27935	48.81934	65
GGTCGGA	2855	47.778423	2
AAAAAGG	31600	43.550026	64
AGGTCGG	3155	42.168636	1
CCGTATC	38640	38.20575	49
CGCCGTA	38810	38.15425	47
CGTATCA	38850	38.074764	50
GCCGTAT	39095	37.814335	48
TCGCCGT	39120	37.674656	46
GTCGCCG	39875	37.125706	45
GTATCAT	39685	37.049065	51
AAAAAAG	38135	37.02788	63
GGTCGCC	40015	36.98662	44
CATTAAA	40480	36.758053	55
GTGGTCG	41015	36.083454	42
CTCGGTG	41105	35.85283	38
TGGTCGC	41365	35.763382	43