HNHJVBGXX_n01_sv112.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HNHJVBGXX_n01_sv112.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	25253618
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGCC	416216	1.6481440401925773	TruSeq Adapter, Index 12 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	46075	43.476013	1
ATCGGAA	46765	43.24877	2
CGTCTGA	46695	42.976326	16
TCTCGTA	45825	42.946022	41
AATCTCG	45795	42.90512	39
CTCGTAT	45895	42.875534	42
ACACGTC	46980	42.867855	13
TCGTATG	46185	42.840405	43
ACGTCTG	46915	42.80383	15
TCGGAAG	47415	42.63199	3
CGTATGC	46435	42.604824	44
CGGAAGA	47775	42.296528	4
ATCTCGT	46605	42.26114	40
CACGTCT	47985	41.914093	14
GTATGCC	47990	41.252697	45
GCACACG	49015	41.161026	11
CACACGT	49110	41.072487	12
GTAATCT	48930	40.114838	37
TGTAATC	50430	38.899117	36
AGTCACC	51660	38.65763	28