HNHJVBGXX_n01_bgm22.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HNHJVBGXX_n01_bgm22.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	43626195
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTATGCC	2276537	5.218279980640072	TruSeq Adapter, Index 9 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	247495	44.145226	1
ATCGGAA	249710	44.095196	2
TCGGAAG	250000	43.859474	3
CGGAAGA	250080	43.762356	4
GTATGCC	244000	43.534058	45
ACACGTC	250925	43.197872	13
CGTCTGA	250285	43.121502	16
ACGTCTG	251060	43.020794	15
CACGTCT	252425	42.8663	14
GCACACG	253770	42.8088	11
CACACGT	253720	42.78122	12
CGATCAG	248210	42.617428	33
ACGATCA	249740	42.5831	32
GTCACGA	249950	42.575985	29
GATCTCG	247820	42.525272	39
CACGATC	250205	42.51385	31
CTCGTAT	248585	42.48934	42
TCTCGTA	248380	42.477356	41
TCGTATG	250015	42.470444	43
TCACGAT	250440	42.470318	30