FastQCFastQC Report
Fri 23 Aug 2019
HNH7FAFXY_n01_vk3-5.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNH7FAFXY_n01_vk3-5.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11565401
Sequences flagged as poor quality0
Sequence length76
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCGGGC7150.015.66409624
ACACTCT57650.015.4240071
CGGGCTG8750.013.599792526
CCCTACA123500.013.2931344
CGCCGGG8000.013.12474323
TCCCTAC131650.012.7094483
CCTACAC132100.012.5604855
CCGGGCT8250.012.30284325
TTCCCTA152700.011.4158442
CTACACG147350.011.379226
CACTCTT96450.011.142921
ACGACGC143800.010.80674510
CGACGCT146800.010.65737811
ACACGAC151400.010.6341958
TACACGA157150.010.4901357
CACGACG158850.010.465969
GACGCTC148200.010.41477612
CCGCCGG11350.010.17601222
ACGCTCT160150.09.68135913
TCCGATC139000.09.51779820
Produced by FastQC (version 0.11.5)