FastQCFastQC Report
Fri 23 Aug 2019
HNH7FAFXY_n01_vk3-13.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNH7FAFXY_n01_vk3-13.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19738308
Sequences flagged as poor quality0
Sequence length76
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACACTCT106550.020.4363251
CACTCTT180750.015.9205981
CCCTACA264650.012.4196074
CCTACAC276700.011.9420275
TCCCTAC288500.011.63555053
CTACACG309250.010.8548576
ACGACGC293650.010.71502610
TTCCCTA320450.010.6393482
ACACGAC310500.010.5618888
GACGCTC294250.010.41957812
TACACGA320050.010.3451787
CGACGCT301400.010.33499611
CACGACG338850.010.101719
TCCGATC258200.010.05796520
CGGGCTG15400.09.99987226
CCGATCT260500.09.94228921
CGCCGGG13850.09.85546923
CCCCAGG21100.09.78660416
ACGCTCT312700.09.76002813
GCCGGGC13500.09.59246924
Produced by FastQC (version 0.11.5)