HNG7HBGXG_n01_2242_d06_replicate2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HNG7HBGXG_n01_2242_d06_replicate2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1525633
Sequences flagged as poor quality	0
Sequence length	151
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATCTAAAATATCTCCCCATCCCATTACTCCCTGTCAAAGCCCTTTGTATC	3065	0.20090021650029857	No Hit
ATGCTACACGATGCTGGGTGTTCAGGATACAAAATCTGGTTCCTGTTTTC	2152	0.14105620421162887	No Hit
ACATAGCACCGTGTTCAACCTTGAGAATTTCTGGTAACAACTCATGGGCT	2113	0.13849988824310958	No Hit
TCTTAACACTTTTGTTACAAGCTGTAATCATTTTACTGATTTCTATGTTC	1974	0.1293889159450536	No Hit
ATGCTGGGTGTTCAGGATACAAAATCTGGTTCCTGTTTTCATGAAGCTTA	1952	0.12794689155255556	No Hit
CCATTACTCCCTGTCAAAGCCCTTTGTATCCTTCTTAACACTTTTGTTAC	1864	0.12217879398256332	No Hit
GTGTAGCATTTGACATATAGAAAAGCACTTAGGGAAAATCATTGTGTGAC	1782	0.11680397579234324	No Hit
TCCCATTACTCCCTGTCAAAGCCCTTTGTATCCTTCTTAACACTTTTGTT	1773	0.11621405672268494	No Hit
TTTCTATGTTCATTGGCTTTTGGTCCATCTTCCCTACTAAGCTGTAAGCT	1542	0.10107280060145526	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGAAA	470	0.0	57.092213	1
GCGAAAG	535	0.0	50.155777	2
CTCCGAC	225	0.0	45.110348	145
TCGACGG	340	0.0	42.646336	145
TCTCCGC	910	0.0	40.63118	145
ACCGTGT	1050	0.0	38.66728	8
CGAAAGC	695	0.0	38.609123	3
AGCACCG	1020	0.0	37.684517	5
CCACGAC	355	0.0	36.759937	145
CCCACGC	495	0.0	36.61554	145
GCACCGT	1115	0.0	35.77462	6
TGATCCG	105	1.8539991E-4	34.524357	9
CACCGTG	1305	0.0	33.334953	7
GTCCTAT	720	0.0	31.224981	1
CCGTGTT	1415	0.0	28.693033	9
TGACGAG	130	6.472748E-4	27.893286	1
CGTAGAC	105	0.0076980134	27.627634	3
ATAGCAC	1845	0.0	26.3361	3
GTACCGT	175	1.2535007E-4	24.864868	3
TCTCGTT	355	1.546141E-10	24.506624	145