HNG7HBGXG_n01_2238_d12_replicate2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HNG7HBGXG_n01_2238_d12_replicate2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1278205
Sequences flagged as poor quality	0
Sequence length	151
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTTATATAGATTGTTCACGTTCGCATCATGCTCATCGAGTGTTTTTTGAT	4157	0.3252216976150148	No Hit
GAATAATATAGTCGACAAGATGAACAAGCAATATGAAATAATTGATCATG	2548	0.1993420460724219	No Hit
GTATAGGTGGGTGGGTGATGTATGCCCCACACGAAAAGAATGCTCTTTCC	2376	0.1858856756154138	No Hit
CACCTATACCGAGCAAACAAATTTGTACATAAGAAACGACACAACAACAA	1642	0.12846139703725146	No Hit
GTCCTACATCGTCGAAAGATCATCAGCTGTAAATGGAACGTGTTACCCTG	1573	0.12306320191205636	No Hit
TCCATGCACTGATCATCACATTTATGGTATAGCTCGAAACAGCCTTTCCC	1447	0.11320562820517836	No Hit
GTATTGGGAGTCAGGATATGGTCATTGGAGAAGAATTTATTGTGTTTATT	1373	0.1074162595201865	No Hit
GTATTATTTTTTCATTTACCTCAAAGTATTTCTGTGTTCCTATTTTGGTT	1334	0.10436510575377189	No Hit
GTACTAAAACCAGGCCAAACATTGCGAGTACGATCCAATGGGAATCTAAT	1315	0.10287864622654426	No Hit
TTGTTATATAGATTGTTCACGTTCGCATCATGCTCATCGAGTGTTTTTTG	1293	0.10115748256343857	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGAAAG	300	0.0	45.92519	2
TATAGCG	145	3.8380676E-10	45.008354	2
AGCGAAA	285	0.0	43.253643	1
GGATAGC	265	0.0	41.045353	5
GTATAGG	890	0.0	40.7379	1
GTTACGT	90	7.475427E-5	40.285255	1
CGAAAGC	360	0.0	38.270992	3
GCGGTAT	185	4.1763997E-9	35.276817	6
TTACGTG	105	1.8519831E-4	34.530216	2
ACCGTGT	580	0.0	33.749664	8
AGCACCG	550	0.0	32.960663	5
ATAGGTG	1150	0.0	32.788696	3
GCACCGT	555	0.0	32.66372	6
ACCGCAC	90	0.0036287832	32.2219	8
GATATAT	715	0.0	31.439402	1
ACATGGT	625	0.0	31.325813	5
ACCGTTA	95	0.004728014	30.52601	8
TTATATA	2740	0.0	28.581945	2
GTATATC	255	3.0195224E-9	28.436651	1
TAGGTGG	1310	0.0	28.23043	4