HNG7HBGXG_n01_2238_d12_replicate1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HNG7HBGXG_n01_2238_d12_replicate1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1424098
Sequences flagged as poor quality	0
Sequence length	151
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTTATATAGATTGTTCACGTTCGCATCATGCTCATCGAGTGTTTTTTGAT	3567	0.25047433533366387	No Hit
GTCCTACATCGTCGAAAGATCATCAGCTGTAAATGGAACGTGTTACCCTG	2348	0.16487629362586	No Hit
GTATAGGTGGGTGGGTGATGTATGCCCCACACGAAAAGAATGCTCTTTCC	2312	0.16234837770996097	No Hit
GAATAATATAGTCGACAAGATGAACAAGCAATATGAAATAATTGATCATG	2214	0.15546682882779134	No Hit
CACCTATACCGAGCAAACAAATTTGTACATAAGAAACGACACAACAACAA	2192	0.15392199132363082	No Hit
GTACTAAAACCAGGCCAAACATTGCGAGTACGATCCAATGGGAATCTAAT	1839	0.12913437137050962	No Hit
GTTTTAGTACCGACCAATAATAATCAATTCTTCCCTGCAGACCATTGACA	1667	0.11705655088343639	No Hit
CTATTAGTAGAGGTCTTATTTTCTCAATTTTCTTTCTCGTCGATTCGTTG	1610	0.11305401734992956	No Hit
TCCATGCACTGATCATCACATTTATGGTATAGCTCGAAACAGCCTTTCCC	1527	0.10722576676605122	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATAGCG	230	0.0	50.444798	2
CACGAGC	100	2.7351925E-6	43.49947	145
ACATGGT	705	0.0	43.20158	5
GCGGTAT	270	0.0	42.973007	6
GCGAAAG	360	0.0	42.300064	2
TCTCCGC	450	0.0	40.277287	145
GGTACTG	370	0.0	39.19835	5
AAGGCGC	230	0.0	37.82563	145
GGATAGC	565	0.0	37.221085	5
AAGCGGC	80	0.0020349205	36.2572	4
ACGGGTC	80	0.002036675	36.25083	8
CGAAAGC	425	0.0	35.830643	3
GTACTGC	275	0.0	34.279533	4
GTTGACA	900	0.0	33.840054	1
TCGCCAT	790	0.0	33.037575	145
TAGAGGT	815	0.0	32.91487	8
CTATAGG	510	0.0	32.70257	1
CGGTATC	355	0.0	32.676807	7
AGAGGTC	860	0.0	32.036747	9
GTACAGC	325	0.0	31.23807	6