FastQCFastQC Report
Wed 2 May 2018
HNFV7BGX5_n02.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNFV7BGX5_n02.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences573621627
Sequences flagged as poor quality0
Sequence length8
%GC31

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATAATC11807041620.583327134560776No Hit
ATTCAGAA11188100519.504321269253676No Hit
CGCTCATT10654644718.574342734814632No Hit
TTAATCAG9945459817.338014000647156No Hit
GCGATTAA9649695216.822404780076397No Hit
AAAAAAAT192389863.353950599913486No Hit
GGGGGGGG49923790.8703261461932291No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.2)