FastQCFastQC Report
Tue 7 Jan 2025
HNFNGDRX5_n02_Rep_3-1-1_rc.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNFNGDRX5_n02_Rep_3-1-1_rc.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences191330729
Sequences flagged as poor quality0
Sequence length64
%GC63

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCCCAGCGGGGCTGCTAAAGCGCATGCTCCAGA5696986329.775595011713985No Hit
GAGGCCAGAGGCCACTTGTGAAGCGCCAAGTGCCCAGCGGGGCTGCTAAAGCGCATGCTCCAGA3739363719.543978740602615No Hit
GAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCCCAAGCGGGGCTGCTAAAGCGCATGCTCCAG2579216313.48040805301066No Hit
GAGGCCAGAGGCCACTTGTGAAGCGCCAAGTGCCCAAGCGGGGCTGCTAAAGCGCATGCTCCAG171189448.947305061488581No Hit
GAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCCCAGCGGAACTGTAAAGCGCATGCTCCAGAC18972640.9916148910925855No Hit
GAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCGGGGCTGCTAAAGCGCATGCTCCAGACTGCC18840160.984690755032873No Hit
GAGGCCAGAGGCCACTTGTGTAGCGGGGCTGCTAAAGCGCATGCTCCAGACTGCCTTGGGAAAA15550840.8127727355285413No Hit
GAGGCCAGAGGCCACTTGTGAAGCGCCAAGTGCCCAGCGGAACTGTAAAGCGCATGCTCCAGAC12959280.6773235051019953No Hit
GAGGCCAGAGGCCACTTGTGAAGCGCCAAGTGCGGGGCTGCTAAAGCGCATGCTCCAGACTGCC12435320.6499384633610005No Hit
GAGGCCAGAGGCCACTTGTGAAGCGGGGCTGCTAAAGCGCATGCTCCAGACTGCCTTGGGAAAA9860630.5153709522530487No Hit
GAGGACAGAGGCCACTTGTGTAGCGCCAAGTGCCCAGCGGGGCTGCTAAAGCGCATGCTCCAGA9836970.5141343500551864No Hit
GAGGCCAGAGGCCACGTGTGTAGCGCCAAGTGCCCAGCGGGGCTGCTAAAGCGCATGCTCCAGA6725060.3514887564140311No Hit
GAGGACAGAGGCCACTTGTGAAGCGCCAAGTGCCCAGCGGGGCTGCTAAAGCGCATGCTCCAGA6325110.3305851617802596No Hit
GAGGCCAGAGGCCACTTGTGTAGCGCCAAGCGGGGCTGCTAAAGCGCATGCTCCAGACTGCCTT4794500.2505870345583641No Hit
GAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCTAAAGCGCATGCTCCAGACTGCCTTGGGAAA4788870.2502927796820343No Hit
GAGGACAGAGGCCACTTGTGTAGCGCCAAGTGCCCAAGCGGGGCTGCTAAAGCGCATGCTCCAG4490470.23469674858135306No Hit
GAGGCCAGAGGCCACGTGTGAAGCGCCAAGTGCCCAGCGGGGCTGCTAAAGCGCATGCTCCAGA4079920.2132391394379729No Hit
GAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCCCACAGCGGGGCTGCTAAAGCGCATGCTCCA3668780.19175069363792577No Hit
GAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCCCAAAGCGGGGCTGCTAAAGCGCATGCTCCA3612920.18883114170332774No Hit
GAGGCCAGAGGCCACTTGTGAAGCGCCAAGCGGGGCTGCTAAAGCGCATGCTCCAGACTGCCTT3177920.16609564060146345No Hit
GAGGCCAGAGGCCACTTGTGAAGCGCCAAGTGCTAAAGCGCATGCTCCAGACTGCCTTGGGAAA3153590.16482402050535228No Hit
GAGGCCAGAGGCCACGTGTGTAGCGCCAAGTGCCCAAGCGGGGCTGCTAAAGCGCATGCTCCAG3039690.15887097780304804No Hit
GAGGACAGAGGCCACTTGTGAAGCGCCAAGTGCCCAAGCGGGGCTGCTAAAGCGCATGCTCCAG2909620.15207280164599174No Hit
GAGGCCAGAGGCCACTTGTGTAGCGCGGGGCTGCTAAAGCGCATGCTCCAGACTGCCTTGGGAA2522150.1318214806990047No Hit
GAGGCCAGAGGCCACTTGTGAAGCGCCAAGTGCCCACAGCGGGGCTGCTAAAGCGCATGCTCCA2439030.12747717069535652No Hit
GAGGCCAGAGGCCACTTGTGAAGCGCCAAGTGCCCAAAGCGGGGCTGCTAAAGCGCATGCTCCA2413950.12616635145941457No Hit
GAGGCCAGAGGCCACTTTTGTAGCGCCAAGTGCCCAGCGGGGCTGCTAAAGCGCATGCTCCAGA2413750.12615589835545968No Hit
GAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCCTAAAGCGCATGCTCCAGACTGCCTTGGGAA2340500.12232744903198482No Hit
GAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCTGCTAAAGCGCATGCTCCAGACTGCCTTGGG2329270.12174050724491829No Hit
GAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCCCGCGGGGCTGCTAAAGCGCATGCTCCAGAC2093780.10943249999324468No Hit
GAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCCTGCTAAAGCGCATGCTCCAGACTGCCTTGG2044010.10683124507407275No Hit
GAGGCCAGAGGCCACTTGTGTAGCGCATGCTCCAGACTGCCTTGGGAAAAGCGCCTCCCCTACC1926370.10068272932781226No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)