FastQCFastQC Report
Tue 7 Jan 2025
HNFNGDRX5_n02_Rep_2-1-1_rc.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNFNGDRX5_n02_Rep_2-1-1_rc.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences209376533
Sequences flagged as poor quality0
Sequence length64
%GC63

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCCCAGCGGGGCTGCTAAAGCGCATGCTCCAGA5402335625.802010963664202No Hit
GAGGCCAGAGGCCACTTGTGAAGCGCCAAGTGCCCAGCGGGGCTGCTAAAGCGCATGCTCCAGA3525393616.837577494895285No Hit
GAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCCCAAGCGGGGCTGCTAAAGCGCATGCTCCAG3358125616.038691403873806No Hit
GAGGCCAGAGGCCACTTGTGAAGCGCCAAGTGCCCAAGCGGGGCTGCTAAAGCGCATGCTCCAG2208181510.54646128847687No Hit
GAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCCCAGCGGAACTGTAAAGCGCATGCTCCAGAC25120281.1997657827298154No Hit
GAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCGGGGCTGCTAAAGCGCATGCTCCAGACTGCC21203471.0126956300303243No Hit
GAGGCCAGAGGCCACTTGTGTAGCGGGGCTGCTAAAGCGCATGCTCCAGACTGCCTTGGGAAAA20498930.979046204762594No Hit
GAGGCCAGAGGCCACTTGTGAAGCGCCAAGTGCCCAGCGGAACTGTAAAGCGCATGCTCCAGAC16963920.8102111424301787No Hit
GAGGCCAGAGGCCACTTGTGAAGCGCCAAGTGCGGGGCTGCTAAAGCGCATGCTCCAGACTGCC13911920.6644450455199772No Hit
GAGGCCAGAGGCCACTTGTGAAGCGGGGCTGCTAAAGCGCATGCTCCAGACTGCCTTGGGAAAA13026770.6221695341569152No Hit
GAGGACAGAGGCCACTTGTGTAGCGCCAAGTGCCCAGCGGGGCTGCTAAAGCGCATGCTCCAGA9307410.444529760171356No Hit
GAGGCCAGAGGCCACGTGTGTAGCGCCAAGTGCCCAGCGGGGCTGCTAAAGCGCATGCTCCAGA6397130.3055323301203005No Hit
GAGGACAGAGGCCACTTGTGAAGCGCCAAGTGCCCAGCGGGGCTGCTAAAGCGCATGCTCCAGA5903620.28196187583257004No Hit
GAGGACAGAGGCCACTTGTGTAGCGCCAAGTGCCCAAGCGGGGCTGCTAAAGCGCATGCTCCAG5810530.2775158188334315No Hit
GAGGCCAGAGGCCACTTGTGTAGCGCCAAGCGGGGCTGCTAAAGCGCATGCTCCAGACTGCCTT5809790.2774804758086237No Hit
GAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCTAAAGCGCATGCTCCAGACTGCCTTGGGAAA5559870.26554408559243836No Hit
GAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCCCACAGCGGGGCTGCTAAAGCGCATGCTCCA4617420.22053187784898512No Hit
GAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCCCAAAGCGGGGCTGCTAAAGCGCATGCTCCA4536250.216655130114319No Hit
GAGGCCAGAGGCCACGTGTGTAGCGCCAAGTGCCCAAGCGGGGCTGCTAAAGCGCATGCTCCAG3960040.18913485400008986No Hit
GAGGCCAGAGGCCACGTGTGAAGCGCCAAGTGCCCAGCGGGGCTGCTAAAGCGCATGCTCCAGA3855200.18412760708001596No Hit
GAGGCCAGAGGCCACTTGTGAAGCGCCAAGCGGGGCTGCTAAAGCGCATGCTCCAGACTGCCTT3801080.18154279018460967No Hit
GAGGACAGAGGCCACTTGTGAAGCGCCAAGTGCCCAAGCGGGGCTGCTAAAGCGCATGCTCCAG3717560.17755380446575644No Hit
GAGGCCAGAGGCCACTTGTGAAGCGCCAAGTGCTAAAGCGCATGCTCCAGACTGCCTTGGGAAA3641120.1739029655247945No Hit
GAGGCCAGAGGCCACTTGTGAAGCGCCAAGTGCCCAAAGCGGGGCTGCTAAAGCGCATGCTCCA3023070.144384375683592No Hit
GAGGCCAGAGGCCACTTGTGAAGCGCCAAGTGCCCACAGCGGGGCTGCTAAAGCGCATGCTCCA3019810.14422867533106015No Hit
GAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCCCGCGGGGCTGCTAAAGCGCATGCTCCAGAC2997590.14316742936993804No Hit
GAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCTGCTAAAGCGCATGCTCCAGACTGCCTTGGG2724050.13010292801056172No Hit
GAGGCCAGAGGCCACTTGTGTAGCGCATGCTCCAGACTGCCTTGGGAAAAGCGCCTCCCCTACC2694400.1286868189760311No Hit
GAGGCCAGAGGCCACTTGTGTAGCGCGGGGCTGCTAAAGCGCATGCTCCAGACTGCCTTGGGAA2692180.12858078990160754No Hit
GAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCCTAAAGCGCATGCTCCAGACTGCCTTGGGAA2436800.11638362547535354No Hit
GAGGCCAGAGGCCACGTGTGAAGCGCCAAGTGCCCAAGCGGGGCTGCTAAAGCGCATGCTCCAG2408640.11503868009888195No Hit
GAGGCCAGAGGCCACTTTTGTAGCGCCAAGTGCCCAGCGGGGCTGCTAAAGCGCATGCTCCAGA2312370.11044074361475839No Hit
GAGGCCAGAGGCCACTTGTGTAGCGCCAAGCGCATGCTCCAGACTGCCTTGGGAAAAGCGCCTC2214330.10575827043616201No Hit
GAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGTAGCGGGGCTGCTAAAGCGCATGCTCCAGACT2156240.10298384298874602No Hit
GAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCCTGCTAAAGCGCATGCTCCAGACTGCCTTGG2120560.10127973606287577No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)