FastQCFastQC Report
Tue 7 Jan 2025
HNFNGDRX5_n01_Rep_3-1-2_rc.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNFNGDRX5_n01_Rep_3-1-2_rc.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences269973803
Sequences flagged as poor quality0
Sequence length162
%GC60

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGGTTCGGCTGGATCTGGATCAGCCATCAACGAGTTCTGCCTGAAGAG7482090.27714133433902105No Hit
GATGGTTCGGCTGGATCTGGATCAAGCAAGATGGACAGGAGGGCCCCCGT6789920.25150292082228437No Hit
GATGGTTCGGCTGGATCTGGATCAAGCGCCCAGGAGAAGATCCTGTACAG5474680.20278560138666493No Hit
GATGGTTCGGCTGGATCTGGATCAGCCAAGCTGGGCAAGGAGCCCGTGCT4230130.1566866841520916No Hit
GATGGTTCGGCTGGATCTGGATCACTGGGCGACGGCTGTGGCCAAAGCCT4098850.15182399012247866No Hit
GATGGTTCGGGTGGATCTGGATCAGCCATCAACGAGTTCTGCCTGAAGAG3896950.14434548673598527No Hit
GATGGTTCGGCTGGATCTGGATCAAACAGCGAGCAGCTGGAGCTGATCAC3864470.14314240704310113No Hit
GATGGTTCGGGTGGATCTGGATCAAGCGCCCAGGAGAAGATCCTGTACAG3458230.1280950211306243No Hit
GATGGTTCGGGTGGATCTGGATCAAGCAAGATGGACAGGAGGGCCCCCGT3325400.12317491412305659No Hit
GATGGTTCGGCTGGATCTGGATCACTGGAGACCTGCTGCAGCAGCGAGCT3244640.12018351276845923No Hit
GATGGTTCGGCTGGATCTGGATCAGTGTTCACCTGCGGCGGCATCCTGAC2806870.1039682357624899No Hit
GATGGTTCGGCTGGATCTGGATCAGTGTTCGCCATGATCATCGGCGCCTT2728870.10107906654928293No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)