FastQCFastQC Report
Tue 7 Jan 2025
HNFNGDRX5_n01_Rep_3-1-1_rc.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNFNGDRX5_n01_Rep_3-1-1_rc.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences191330729
Sequences flagged as poor quality0
Sequence length162
%GC60

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGTTCGGGTCGATCTGGATCAGCCATCAACGAGTTCTGCCTGAAGAGCA5457590.2852437780655715No Hit
TGGTTCGGGTCGATCTGGATCAAGCAAGATGGACAGGAGGGCCCCCGTGC5298690.2769387869734192No Hit
TGGTTCGGGTCGATCTGGATCAAGCGCCCAGGAGAAGATCCTGTACAGCG4310650.22529836281552032No Hit
TGGTTCGGGTCGATCTGGATCAGCCAAGCTGGGCAAGGAGCCCGTGCTGG3346840.1749243322017552No Hit
TGGTTCGGGTCGATCTGGATCACTGGGCGACGGCTGTGGCCAAAGCCTTG3058460.15985200160921353No Hit
TGGTTCGGGTCGATCTGGATCAAACAGCGAGCAGCTGGAGCTGATCACCA3047250.1592661051325425No Hit
TGGTTCGGGTCGATCTGGATCACTGGAGACCTGCTGCAGCAGCGAGCTGA2567760.13420531105591513No Hit
TGGTTCGGGTCGATCTGGATCAGTGTTCACCTGCGGCGGCATCCTGACCG2388090.12481476511804854No Hit
TGGTTCGGGTGGATCTGGATCAGCCATCAACGAGTTCTGCCTGAAGAGCA2375890.12417712577680086No Hit
TGGTTCGGGTGGATCTGGATCAAGCGCCCAGGAGAAGATCCTGTACAGCG2293070.119848495429085No Hit
TGGTTCGGGTCGATCTGGATCAGTGTTCGCCATGATCATCGGCGCCTTCG2209510.11548118859673609No Hit
TGGTTCGGGTGGATCTGGATCAAGCAAGATGGACAGGAGGGCCCCCGTGC2055530.10743334386187385No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)