FastQCFastQC Report
Tue 7 Jan 2025
HNFNGDRX5_n01_Rep_2-1-2_rc.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNFNGDRX5_n01_Rep_2-1-2_rc.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences232780680
Sequences flagged as poor quality0
Sequence length162
%GC60

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGGTTCGGGAGGATCTGGATCAGCCCAGAGCCAGACCGTGTTCCAGAAC5847950.2512214501650223No Hit
ATGGTTCGGGTGGATCTGGATCAGCCCAGAGCCAGACCGTGTTCCAGAAC5836050.25071023935491554No Hit
ATGGTTCGGGTGGATCTGGATCAGAGAAGCACGGCTTCAACCAGCAGACC3591330.15427955618997247No Hit
ATGGTTCGGGAGGATCTGGATCAGAGAAGCACGGCTTCAACCAGCAGACC3274800.140681778230049No Hit
ATGGTTCGGGTGGATCTGGATCACCCCTGAGCCCCATGCTGTACAGCAGC2497490.1072894021960929No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)