FastQCFastQC Report
Tue 7 Jan 2025
HNFNGDRX5_n01_Rep_2-1-1_rc.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNFNGDRX5_n01_Rep_2-1-1_rc.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences209376533
Sequences flagged as poor quality0
Sequence length162
%GC61

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTTCGGGTGGATCTGGATCAGCCCAGAGCCAGACCGTGTTCCAGAACCC8920820.426065895359916No Hit
GGTTCGGGTGGATCTGGATCAGAGAAGCACGGCTTCAACCAGCAGACCCT4333320.20696302197343194No Hit
GGTTCGGGTGCATCTGGATCAGCCCAGAGCCAGACCGTGTTCCAGAACCC4177030.19949847961232597No Hit
GGTTCGGGTGGATCTGGATCACCCCTGAGCCCCATGCTGTACAGCAGCAG2775530.13256165627692382No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)