[2022-11-28 16:38:34,303] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2022-11-28 16:38:34,303] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2022-11-28 16:38:34,303] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2022-11-28 16:38:34,304] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2022-11-28 16:38:34,304] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}} [2022-11-28 16:38:34,304] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HNF7WDRX2/2 [2022-11-28 16:38:34,807] multiqc [WARNING] MultiQC Version v1.13 now available! [2022-11-28 16:38:34,807] multiqc [INFO ] This is MultiQC v1.9 [2022-11-28 16:38:34,808] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HNF7WDRX2/2 [2022-11-28 16:38:34,808] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/HNF7WDRX2/2 [2022-11-28 16:38:34,808] multiqc [INFO ] Template : default [2022-11-28 16:38:34,808] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2022-11-28 16:38:34,808] multiqc [INFO ] Searching : /scratch/gencore/logs/html/HNF7WDRX2/2 [2022-11-28 16:38:34,808] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2022-11-28 16:38:34,808] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-27440394/tmpta6hzle5 [2022-11-28 16:38:34,899] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T16_H3_b_fastqc.html [2022-11-28 16:38:34,901] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern 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filesize limit: HNF7WDRX2_l02_n01_T16_A4_b_fastqc.html [2022-11-28 16:38:35,118] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n01_T16_A4_b_fastqc.html [2022-11-28 16:38:35,118] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n01_T16_A4_b_fastqc.html [2022-11-28 16:38:35,119] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n01_T16_A4_b_fastqc.html [2022-11-28 16:38:35,119] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n01_T16_A4_b_fastqc.html [2022-11-28 16:38:35,119] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n01_T16_A4_b_fastqc.html [2022-11-28 16:38:35,183] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search 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search pattern filesize limit: HNF7WDRX2_l02_n02_T16_F3_b_fastqc.html [2022-11-28 16:38:35,256] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T16_F3_b_fastqc.html [2022-11-28 16:38:35,257] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T16_F3_b_fastqc.html [2022-11-28 16:38:35,320] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n01_T16_E4_b_fastqc.html [2022-11-28 16:38:35,322] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n01_T16_E4_b_fastqc.html [2022-11-28 16:38:35,391] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n01_T16_C4_b_fastqc.html [2022-11-28 16:38:35,393] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n01_T16_C4_b_fastqc.html [2022-11-28 16:38:35,464] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T14_C10_b_fastqc.html [2022-11-28 16:38:35,465] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T14_C10_b_fastqc.html [2022-11-28 16:38:35,465] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T14_C10_b_fastqc.html [2022-11-28 16:38:35,465] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T14_C10_b_fastqc.html [2022-11-28 16:38:35,466] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T14_C10_b_fastqc.html [2022-11-28 16:38:35,466] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T14_C10_b_fastqc.html [2022-11-28 16:38:35,466] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T14_C10_b_fastqc.html [2022-11-28 16:38:35,530] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n01_T16_F3_b_fastqc.html [2022-11-28 16:38:35,531] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n01_T16_F3_b_fastqc.html [2022-11-28 16:38:35,600] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n01_T16_G4_b_fastqc.html [2022-11-28 16:38:35,602] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n01_T16_G4_b_fastqc.html [2022-11-28 16:38:35,671] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n01_T14_E10_b_fastqc.html [2022-11-28 16:38:35,673] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n01_T14_E10_b_fastqc.html [2022-11-28 16:38:35,740] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n01_T16_H3_b_fastqc.html [2022-11-28 16:38:35,742] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n01_T16_H3_b_fastqc.html [2022-11-28 16:38:35,811] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_undetermined_fastqc.html [2022-11-28 16:38:35,813] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_undetermined_fastqc.html [2022-11-28 16:38:35,871] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n01_T16_B3_b_fastqc.html [2022-11-28 16:38:35,872] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n01_T16_B3_b_fastqc.html [2022-11-28 16:38:35,941] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T16_C4_b_fastqc.html [2022-11-28 16:38:35,943] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T16_C4_b_fastqc.html [2022-11-28 16:38:36,012] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T16_E4_b_fastqc.html [2022-11-28 16:38:36,014] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T16_E4_b_fastqc.html [2022-11-28 16:38:36,014] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T16_E4_b_fastqc.html [2022-11-28 16:38:36,014] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T16_E4_b_fastqc.html [2022-11-28 16:38:36,014] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T16_E4_b_fastqc.html [2022-11-28 16:38:36,014] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T16_E4_b_fastqc.html [2022-11-28 16:38:36,014] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T16_E4_b_fastqc.html [2022-11-28 16:38:36,078] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n01_T14_C10_b_fastqc.html [2022-11-28 16:38:36,080] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n01_T14_C10_b_fastqc.html [2022-11-28 16:38:36,150] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T14_E10_b_fastqc.html [2022-11-28 16:38:36,152] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T14_E10_b_fastqc.html [2022-11-28 16:38:36,221] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T14_A10_b_fastqc.html [2022-11-28 16:38:36,223] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T14_A10_b_fastqc.html [2022-11-28 16:38:36,223] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T14_A10_b_fastqc.html [2022-11-28 16:38:36,223] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T14_A10_b_fastqc.html [2022-11-28 16:38:36,223] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T14_A10_b_fastqc.html [2022-11-28 16:38:36,223] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T14_A10_b_fastqc.html [2022-11-28 16:38:36,223] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T14_A10_b_fastqc.html [2022-11-28 16:38:36,288] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T16_A4_b_fastqc.html [2022-11-28 16:38:36,289] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T16_A4_b_fastqc.html [2022-11-28 16:38:36,290] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T16_A4_b_fastqc.html [2022-11-28 16:38:36,290] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T16_A4_b_fastqc.html [2022-11-28 16:38:36,290] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T16_A4_b_fastqc.html [2022-11-28 16:38:36,290] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T16_A4_b_fastqc.html [2022-11-28 16:38:36,290] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T16_A4_b_fastqc.html [2022-11-28 16:38:36,354] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T16_D3_b_fastqc.html [2022-11-28 16:38:36,356] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T16_D3_b_fastqc.html [2022-11-28 16:38:36,424] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n01_T14_G10_b_fastqc.html [2022-11-28 16:38:36,426] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n01_T14_G10_b_fastqc.html [2022-11-28 16:38:36,494] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T14_G10_b_fastqc.html [2022-11-28 16:38:36,496] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T14_G10_b_fastqc.html [2022-11-28 16:38:36,496] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T14_G10_b_fastqc.html [2022-11-28 16:38:36,496] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T14_G10_b_fastqc.html [2022-11-28 16:38:36,496] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T14_G10_b_fastqc.html [2022-11-28 16:38:36,496] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T14_G10_b_fastqc.html [2022-11-28 16:38:36,496] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T14_G10_b_fastqc.html [2022-11-28 16:38:36,560] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n01_undetermined_fastqc.html [2022-11-28 16:38:36,562] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n01_undetermined_fastqc.html [2022-11-28 16:38:36,618] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T16_B3_b_fastqc.html [2022-11-28 16:38:36,619] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNF7WDRX2_l02_n02_T16_B3_b_fastqc.html [2022-11-28 16:38:36,937] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2022-11-28 16:38:36,937] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2022-11-28 16:38:36,949] multiqc.modules.custom_content.custom_content [INFO ] demux_report-2: Found 13 samples (table) [2022-11-28 16:38:36,959] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2022-11-28 16:38:36,960] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2022-11-28 16:38:36,963] multiqc [DEBUG ] No samples found: conpair [2022-11-28 16:38:36,966] multiqc [DEBUG ] No samples found: peddy [2022-11-28 16:38:36,969] multiqc [DEBUG ] No samples found: somalier [2022-11-28 16:38:36,972] multiqc [DEBUG ] No samples found: methylQA [2022-11-28 16:38:36,976] multiqc [DEBUG ] No samples found: mosdepth [2022-11-28 16:38:36,979] multiqc [DEBUG ] No samples found: phantompeakqualtools [2022-11-28 16:38:36,982] multiqc [DEBUG ] No samples found: qualimap [2022-11-28 16:38:36,985] multiqc [DEBUG ] No samples found: preseq [2022-11-28 16:38:36,988] multiqc [DEBUG ] No samples found: quast [2022-11-28 16:38:36,991] multiqc [DEBUG ] No samples found: qorts [2022-11-28 16:38:36,994] multiqc [DEBUG ] No samples found: rna_seqc [2022-11-28 16:38:36,997] multiqc [DEBUG ] No samples found: rockhopper [2022-11-28 16:38:37,000] multiqc [DEBUG ] No samples found: rsem [2022-11-28 16:38:37,005] multiqc [DEBUG ] No samples found: rseqc [2022-11-28 16:38:37,008] multiqc [DEBUG ] No samples found: busco [2022-11-28 16:38:37,011] multiqc [DEBUG ] No samples found: goleft_indexcov [2022-11-28 16:38:37,014] multiqc [DEBUG ] No samples found: disambiguate [2022-11-28 16:38:37,017] multiqc [DEBUG ] No samples found: supernova [2022-11-28 16:38:37,023] multiqc [DEBUG ] No samples found: deeptools [2022-11-28 16:38:37,026] multiqc [DEBUG ] No samples found: sargasso [2022-11-28 16:38:37,029] multiqc [DEBUG ] No samples found: verifybamid [2022-11-28 16:38:37,032] multiqc [DEBUG ] No samples found: mirtrace [2022-11-28 16:38:37,035] multiqc [DEBUG ] No samples found: happy [2022-11-28 16:38:37,038] multiqc [DEBUG ] No samples found: mirtop [2022-11-28 16:38:37,041] multiqc [DEBUG ] No samples found: homer [2022-11-28 16:38:37,044] multiqc [DEBUG ] No samples found: macs2 [2022-11-28 16:38:37,047] multiqc [DEBUG ] No samples found: theta2 [2022-11-28 16:38:37,050] multiqc [DEBUG ] No samples found: snpeff [2022-11-28 16:38:37,054] multiqc [DEBUG ] No samples found: gatk [2022-11-28 16:38:37,057] multiqc [DEBUG ] No samples found: htseq [2022-11-28 16:38:37,060] multiqc [DEBUG ] No samples found: bcftools [2022-11-28 16:38:37,063] multiqc [DEBUG ] No samples found: featureCounts [2022-11-28 16:38:37,066] multiqc [DEBUG ] No samples found: fgbio [2022-11-28 16:38:37,072] multiqc [DEBUG ] No samples found: dragen [2022-11-28 16:38:37,075] multiqc [DEBUG ] No samples found: dedup [2022-11-28 16:38:37,078] multiqc [DEBUG ] No samples found: damageprofiler [2022-11-28 16:38:37,087] multiqc [DEBUG ] No samples found: biobambam2 [2022-11-28 16:38:37,091] multiqc [DEBUG ] No samples found: mtnucratio [2022-11-28 16:38:37,093] multiqc [DEBUG ] No samples found: picard [2022-11-28 16:38:37,096] multiqc [DEBUG ] No samples found: prokka [2022-11-28 16:38:37,099] multiqc [DEBUG ] No samples found: samblaster [2022-11-28 16:38:37,103] multiqc [DEBUG ] No samples found: samtools [2022-11-28 16:38:37,106] multiqc [DEBUG ] No samples found: sexdeterrmine [2022-11-28 16:38:37,109] multiqc [DEBUG ] No samples found: bamtools [2022-11-28 16:38:37,112] multiqc [DEBUG ] No samples found: jellyfish [2022-11-28 16:38:37,116] multiqc [DEBUG ] No samples found: vcftools [2022-11-28 16:38:37,119] multiqc [DEBUG ] No samples found: longranger [2022-11-28 16:38:37,122] multiqc [DEBUG ] No samples found: stacks [2022-11-28 16:38:37,125] multiqc [DEBUG ] No samples found: varscan2 [2022-11-28 16:38:37,131] multiqc [DEBUG ] No samples found: bbmap [2022-11-28 16:38:37,134] multiqc [DEBUG ] No samples found: bismark [2022-11-28 16:38:37,137] multiqc [DEBUG ] No samples found: biscuit [2022-11-28 16:38:37,140] multiqc [DEBUG ] No samples found: hicexplorer [2022-11-28 16:38:37,143] multiqc [DEBUG ] No samples found: hicup [2022-11-28 16:38:37,146] multiqc [DEBUG ] No samples found: hicpro [2022-11-28 16:38:37,149] multiqc [DEBUG ] No samples found: salmon [2022-11-28 16:38:37,152] multiqc [DEBUG ] No samples found: kallisto [2022-11-28 16:38:37,155] multiqc [DEBUG ] No samples found: slamdunk [2022-11-28 16:38:37,158] multiqc [DEBUG ] No samples found: star [2022-11-28 16:38:37,161] multiqc [DEBUG ] No samples found: hisat2 [2022-11-28 16:38:37,164] multiqc [DEBUG ] No samples found: tophat [2022-11-28 16:38:37,167] multiqc [DEBUG ] No samples found: bowtie2 [2022-11-28 16:38:37,170] multiqc [DEBUG ] No samples found: bowtie1 [2022-11-28 16:38:37,173] multiqc [DEBUG ] No samples found: snpsplit [2022-11-28 16:38:37,176] multiqc [DEBUG ] No samples found: kat [2022-11-28 16:38:37,179] multiqc [DEBUG ] No samples found: leehom [2022-11-28 16:38:37,181] multiqc [DEBUG ] No samples found: adapterRemoval [2022-11-28 16:38:37,184] multiqc [DEBUG ] No samples found: clipandmerge [2022-11-28 16:38:37,187] multiqc [DEBUG ] No samples found: cutadapt [2022-11-28 16:38:37,190] multiqc [DEBUG ] No samples found: flexbar [2022-11-28 16:38:37,193] multiqc [DEBUG ] No samples found: kaiju [2022-11-28 16:38:37,196] multiqc [DEBUG ] No samples found: kraken [2022-11-28 16:38:37,199] multiqc [DEBUG ] No samples found: malt [2022-11-28 16:38:37,202] multiqc [DEBUG ] No samples found: trimmomatic [2022-11-28 16:38:37,205] multiqc [DEBUG ] No samples found: sickle [2022-11-28 16:38:37,208] multiqc [DEBUG ] No samples found: skewer [2022-11-28 16:38:37,211] multiqc [DEBUG ] No samples found: sortmerna [2022-11-28 16:38:37,214] multiqc [DEBUG ] No samples found: biobloomtools [2022-11-28 16:38:37,217] multiqc [DEBUG ] No samples found: fastq_screen [2022-11-28 16:38:37,219] multiqc [DEBUG ] No samples found: afterqc [2022-11-28 16:38:37,222] multiqc [DEBUG ] No samples found: fastp [2022-11-28 16:38:38,087] multiqc.modules.fastqc.fastqc [INFO ] Found 26 reports [2022-11-28 16:38:38,449] multiqc [DEBUG ] No samples found: pycoqc [2022-11-28 16:38:38,452] multiqc [DEBUG ] No samples found: minionqc [2022-11-28 16:38:38,456] multiqc [DEBUG ] No samples found: multivcfanalyzer [2022-11-28 16:38:38,459] multiqc [DEBUG ] No samples found: clusterflow [2022-11-28 16:38:38,461] multiqc [DEBUG ] No samples found: bcl2fastq [2022-11-28 16:38:38,465] multiqc [DEBUG ] No samples found: interop [2022-11-28 16:38:38,468] multiqc [DEBUG ] No samples found: ivar [2022-11-28 16:38:38,471] multiqc [DEBUG ] No samples found: flash [2022-11-28 16:38:38,474] multiqc [DEBUG ] No samples found: seqyclean [2022-11-28 16:38:38,474] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found. [2022-11-28 16:38:38,474] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Lane 2 Demultiplexing Report'. [2022-11-28 16:38:38,474] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2022-11-28 16:38:38,474] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Lane Statistics'. [2022-11-28 16:38:38,474] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2022-11-28 16:38:38,505] multiqc [INFO ] Compressing plot data [2022-11-28 16:38:38,921] multiqc [INFO ] Report : multiqc_report.html [2022-11-28 16:38:38,921] multiqc [INFO ] Data : multiqc_data [2022-11-28 16:38:38,921] multiqc [DEBUG ] Moving data file from '/state/partition1/job-27440394/tmpta6hzle5/multiqc_data' to '/scratch/gencore/logs/html/HNF7WDRX2/2/multiqc_data' [2022-11-28 16:38:41,197] multiqc [INFO ] MultiQC complete