FastQCFastQC Report
Sat 26 Sep 2020
HNCVFBGXG_n02_FD_S3_R1_H05.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCVFBGXG_n02_FD_S3_R1_H05.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAACAAGGTCGTTTTTAAACAATTCGACACTAATTGATGGCCATCCGAAT17.6923076923076925No Hit
AGCTGGGTCCAAAATGAATTCAATAAGGCATGAGAATTGACTGATTCAAG17.6923076923076925No Hit
CCTCATATACAACAGGATGGGAACAGTGACCACAGCAGCTGCGTTTGGTC17.6923076923076925No Hit
CACATTGACCAATTAGCACATTAGCCTTCTCTCCTTTTTCAAGATTGATC17.6923076923076925No Hit
AGGCTCTATTGGGAAAGTGTGCAGGACCTTACTGGCAAAATCTGTATTCA17.6923076923076925No Hit
TAAAAGAACTGAGAGATCTAATGTCGCAGTCCCGAACTCGCGAGATACTC17.6923076923076925No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG17.6923076923076925No Hit
GTACTGATCCAAAATGGAAGACTTTGTGCGACAATGCTTCAATCCAATGA17.6923076923076925No Hit
GAACAAAGAGGAAATAGAGATAACAACCCACTTTCAAAGAAAAAGTAGAG17.6923076923076925No Hit
AAGAATAAGTTGAGACTACACTGGCAAAACTGCTCTACGACTAACTGAAA17.6923076923076925No Hit
GGGTAGATAAACTAACTCAAGGTCGCCAGACTTATGATTGGACATTAAAC17.6923076923076925No Hit
CCCTTGCCCAATTAGCACATTAGCCTTCTCTCCTTTTGCAAGATTGCTCA17.6923076923076925No Hit
GTATAAGTTTGGTCCTCCATCTGATACTAATAGCCCTACCTTTGATTGGG17.6923076923076925No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)