HNCVFBGXG_n02_FD-S4_R1_F02.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HNCVFBGXG_n02_FD-S4_R1_F02.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1295735
Sequences flagged as poor quality	0
Sequence length	151
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TTCCATAGGTGACCACTTTGCCCATGGGTTTGAGGAGGTTGTAGCCCTTG	2752	0.21238910734062136	No Hit
GTGGAGAACGTGACGGTGTTCGGGACGGCCTCGGCCAGCAAACACGAGGT	2312	0.17843154657395224	No Hit
GTATAGACCTCTTAACAATATTGTTCTTCCAATCCATGAGCATGGATTGT	2099	0.1619930001119056	No Hit
CCTATGGAATGGCCAACCTGCTGACGGGCCCCAAGCGGAACCTGATGGCC	1923	0.14840997580523796	No Hit
CTCTAAGACCACTAAAATAACAGAACAGGACTTAAAAAACCCAAGAACCC	1602	0.12363639170046345	No Hit
GTCCTACCCTAGCTATGATTCAGTTTCATATTTCATTCTGTTTCTCAGAG	1577	0.12170698483872089	No Hit
GACCAGCACAGTGCGGCCCCCGGTGTCTCTCTTCCCGGGGCCCTGAGGGT	1558	0.12024063562379654	No Hit
TCCTATGAGAGCACAGAATGGAGAAGCCACGGCTAAGATGCGGTACAAGC	1370	0.10573149602349245	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCGCCG	10	0.0070844316	145.04565	145
AGCGCGT	30	0.0019376096	72.483604	8
GGCGTCT	135	0.0	64.42986	8
TCCTATG	485	0.0	56.745235	1
CGGCTTT	55	3.2143563E-4	52.743874	145
TTAAGCT	540	0.0	48.348553	145
TATAGAC	835	0.0	47.706825	2
CTTGACG	80	3.7402613E-5	45.302246	9
CCCATTA	305	0.0	45.118855	2
TATATCC	340	0.0	44.746807	4
ATAGACC	900	0.0	44.271587	3
GTATTAC	370	0.0	43.063423	1
GATGATA	165	1.369699E-9	39.536507	8
TATAGGC	80	0.0020441313	36.223606	4
CTCTTAA	1110	0.0	35.26229	9
AATGCCG	85	0.0027380532	34.128387	145
CTATACT	255	1.8189894E-12	34.092804	4
TGCACGG	85	0.0027557418	34.08359	2
GTATAGC	85	0.0027562634	34.082275	1
CTAAAGC	320	0.0	33.958317	3