FastQCFastQC Report
Fri 2 Oct 2020
HNCVFBGXG_n01_FD_S4_R1_E11.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCVFBGXG_n01_FD_S4_R1_E11.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATTGACCTGAAGTACTTCAATGAATCAACAAAGAAGAAAATTGAGAAA17.6923076923076925No Hit
GCCATAAGCACCACATTCCCTTATACTGGAGAACCTCCATACAGCCATGG17.6923076923076925No Hit
GGGCTGGGAAGGACCCTAAGAAAACAGGAGGACCCATAAATAGAAGAGGA17.6923076923076925No Hit
ATAAATGTTTCTTTTCCGACTGCCAACTTCAGTAGTTGAATAGCTTATAC17.6923076923076925No Hit
GGACAAAACTAAGTGCATTCAAAATCAAAATCGTCGAATCTAACTGGAGA17.6923076923076925No Hit
ATTTGAATTCACAAGCTTTTTTTATCGCTATGGATTTGTGGCTAATTTTA17.6923076923076925No Hit
GGGCAAGAATCAAAACTAGGCTTTTCACTATAAGACAAGAAATGGCCAGT17.6923076923076925No Hit
AGTTAAATTCATTATTTTTGCCGTCTGAGTTCTTCAATGGTGGAACAGAT17.6923076923076925No Hit
TCTCCAAACAACTCAAGATTTGAGTCAGTCGCTTGGTCACCAATTGCTTG17.6923076923076925No Hit
GTTTCTAGCAGCGATAATCAAACTTTGGTCAACATCATCATTTCTCGCTT17.6923076923076925No Hit
GATCCCAATGATATTTGCTGCAATGACGAGAGGATCACTTGAATCGCTGC17.6923076923076925No Hit
AATATATTCAATATGGAGAGAATAAAAGAACTGAGATATATAATGTCTAA17.6923076923076925No Hit
GCAAAACCCAGGGATCATTAATCAGGCACTCCTCGATTGCTTCATATAGC17.6923076923076925No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)