FastQCFastQC Report
Fri 2 Oct 2020
HNCVFBGXG_n01_FD_S4_R1_D04.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCVFBGXG_n01_FD_S4_R1_D04.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTGCATGTGTGAGGAAGGAGTTGAACCAAGATGCATTAAGCAAAACCC112.5No Hit
GAGTAGGATGCAATTTTCCTCATTGACTGTGAATGTGAGAGGATCAGGGT112.5No Hit
GTCAATTGCTGAGGCAATAATTGTGGCCATGGTAATCTCACAGGAGGATT112.5No Hit
CCCAAGAGGAATCGTTCTAATGAACCAAGTGGGTATGCACAAACAGACTG112.5No Hit
GTGAGAACCAATGGAACCTCCAAGATCAAGATGAAATGGGGCATGGAAAT112.5No Hit
TTGATGTCCAAGCAATGCATTCTTGATGCAGTCGCACGGACGTGGGACCC112.5No Hit
AAATACGGAATCTTCACATTCCTGAAGTCTGCTTAAAATGGTAGCTAATG112.5No Hit
CCTGTATGGGTTCATTATAAAAGGAAGGTCTCATTTGAGAAATGATACTG112.5No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)