FastQCFastQC Report
Sat 26 Sep 2020
HNCVFBGXG_n01_FD_S4_R1_A05.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCVFBGXG_n01_FD_S4_R1_A05.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCGAGAGCAGGTCAAATATATTCAATATGGAGAGAATAAAAGAACTGAG17.142857142857142No Hit
GGTGTATCCTTTCCTTGAACTGAATCTCGTGTGGTTGCCTTGTTGTAATT17.142857142857142No Hit
GGTCCAATATATTCAATATGGAGAGAATAAAAGCACTGAGAGATCTAATG17.142857142857142No Hit
ATGGAAGACTTTGTGCGACAATGCTTCAATCCAATGATCGTCGAGCTTGC17.142857142857142No Hit
ATAGGTGCCATAGGGGAGACACACAAATTCAGACGAGAAGATCATTTGAG17.142857142857142No Hit
GAATAAAAGAACTGAGAGATCTAATGTCGCAGTCCCGCACTCGCGAGATA17.142857142857142No Hit
GGATAGAGCAGATAAACTATACAAGAAGCTCAAAAGAGAAATAACGTACC17.142857142857142No Hit
ATTCCATTCAAGTCTTCCGATGAGGACCCCAACTGCATTTTTGACATCCT17.142857142857142No Hit
CCCATGGTCCAGCCAAAAGCATGGAAAATGATGCCGTTGCAACTACACAT17.142857142857142No Hit
CCTATATGAACTGCTAGGGAAAAATTTCTCGAATAGATTGCAGCACTTCT17.142857142857142No Hit
GCTTTGGAGTGTCTGGAGTAAATGAATCAGCTGACATGAGTATTGGAGTA17.142857142857142No Hit
CAGCTAATGAGTCAGGAAGGCTAATAGATTTCTTAAAGGATGTAATGGAA17.142857142857142No Hit
AGTTAAATTCATTATTTTTGCCGTCTGAGTTCTTCAATGGTGGAACAGAT17.142857142857142No Hit
GGAATGGATCCCAGAATGTGCTCTCTAATGCAAGGTTCAACACTTCCCAG17.142857142857142No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)