FastQCFastQC Report
Sat 26 Sep 2020
HNCVFBGXG_n01_FD_S3_R1_E05.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCVFBGXG_n01_FD_S3_R1_E05.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGCGACAATGCTTCAATCCAATGATCGTCGAGCTTGCGGGAAAGGCAAT15.555555555555555No Hit
GCGGGAAAGGCAATGAAAGAATATGGGGAACATCCGAAAATCGAAACTAA15.555555555555555No Hit
GACCAAAGTTTGATTATCGCTGCTAGAAACATAGTAAGAAGAGCAGCAGT15.555555555555555No Hit
GGTGCATAAAGTCCAATTGCCTCCGCCACCACACAGCCGCCGTCAAGCGA15.555555555555555No Hit
TTACAGTTCCTTAACAAAATAAAAAGTCCCAATAGTACCTTTAACAATTG15.555555555555555No Hit
GGGCCCCAGTGATTGTGAAAGACATCTCTGTGTCTTGTGAATTAGTGATC15.555555555555555No Hit
TTAGGCCTCTCATTAAAATACAAGTTGCGATGGCTGCCCGTCCACCTTTC15.555555555555555No Hit
GTTCACAGCAGTAGGTAAAGAGTTCAACCACCTGGAAAAAAGAATAGAGA15.555555555555555No Hit
GAGAGTGAGTGAACCAGCCCTTGTTAAACAACTAATGTGCAGTAAACGCC15.555555555555555No Hit
GTTTATCATGTTGTTCTTTATATCTGTTACTCCAATACTCATGTAAGCTG15.555555555555555No Hit
GGGGTGGTCATTGCTTGCTAGGTTTTGTGCAGGTTGTTGTGTTCGATGGT15.555555555555555No Hit
GCCATATCTCTTGTCTTCTTTGCCCAAAATGAGAAATCCTCTCAGGACAG15.555555555555555No Hit
CTCCAACATCTTTGCAGTCATCAAAGTCTACTTTTTCTGGTGCCATATTT15.555555555555555No Hit
TTCATGTACTCTTATTTTCAGTGTTTGGAGGTTGCCCGTTAGGACTTCTT15.555555555555555No Hit
CTGTTCCAGCAAATGCGGGATGTGCTTGGGACATTTGACACTGTCCAAAT15.555555555555555No Hit
GGAAATAGAGATAACAACCCACTTTCAAAGAAAAAGGAGAGTAAGAGACA15.555555555555555No Hit
CAACCTTTGGATATAATACCACCGCTATAACCCATTTGGAGGAGTATCCC15.555555555555555No Hit
ACATTAAACAGAAATCAACCGGCAGCAACTGCATTGGCCAACACCATAGA15.555555555555555No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)