FastQCFastQC Report
Sat 26 Sep 2020
HNCVFBGXG_n01_FD_S3_R1_B01.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCVFBGXG_n01_FD_S3_R1_B01.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGATAACATTGTGGGATCGTGTGACCATTGAATTTTCACAATTTCCCAGT15.263157894736842No Hit
GCATTGTTTACAGAATCAATCTCTTTATGACTGACAAAGGGAATCAGGAG15.263157894736842No Hit
ATATATATCAAACAGCGTCAAAAAAGAATAAAATCATGAATTATAAATTA15.263157894736842No Hit
GATGATGACTAATTCACAAGACACAGAGATTTCTTTCACAATCACTGGGG15.263157894736842No Hit
GTCTCTTACTCTCCTTTTCTTTGAAAGTGGGTTGTTATCTCTATTTCCTC15.263157894736842No Hit
ACTTATTCGTCATCAATGATGTGGGAGATCAATGGCCCTGAGACAGTGCT15.263157894736842No Hit
AGCCTCTAGAACACAGTCTGTTTGTGCATACACACTTGGTTCATTATCCT15.263157894736842No Hit
CTACTGGGAGAACCCTTGTTTTACGGACCAATTCTCTTTCTAGCATGTAC15.263157894736842No Hit
CGTCTAATGGAGCAAATGGAGTAAAAGGGTTTTCATTCAAATACGGCAAT15.263157894736842No Hit
TACCAATAGACCGGAGATCCACAAAACAGCCTTCCACCACGATAGGGATA15.263157894736842No Hit
CACAGTAAACAGAACACACCAATACTCAGAAAAGGGAAAGTGGACGACAA15.263157894736842No Hit
GCTCATGTTGATTCCCACTAACTTGCTGGTCCTGTAGAATCTGTCCACTC15.263157894736842No Hit
GTCTAAGGAGGTCCACCATCCGTACTACTCCAATCTGTTTGCGGGGTCAC15.263157894736842No Hit
CATTGAAGTACTTCAGGTAAATGATTTCTAGCATTTCTGCGGGTATTTGT15.263157894736842No Hit
TCATTAAATAAGCTGAAACGAGAAAGCTCTTATCTCTTGTTCTACTTCAA15.263157894736842No Hit
AGAAGGAAGAGCTACAGGATTGTAAAATTTCTACCTTGATTGTGGCTTAC15.263157894736842No Hit
GAATAAGAGAGGCTATCTAATAAGAGCACTGACATTAAATACGATGACCA15.263157894736842No Hit
CATATAGACTGTTGAATACAGATTTTGCCAGTAAGGTCCTGCACACTTTC15.263157894736842No Hit
GGTTCCAGGTTGTCCCTAAGTGCCTGAACAATCAGAAGCAATTATCTAGA15.263157894736842No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)