HNCVFBGXG_n01_FD-S4_R1_F02.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HNCVFBGXG_n01_FD-S4_R1_F02.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1295735
Sequences flagged as poor quality	0
Sequence length	151
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TTCCATAGGTGACCACTTTGCCCATGGGTTTGAGGAGGTTGTAGCCCTTG	3027	0.23361258281978953	No Hit
GTATAGACCTCTTAACAATATTGTTCTTCCAATCCATGAGCATGGATTGT	2218	0.1711769767738002	No Hit
GTGGAGAACGTGACGGTGTTCGGGACGGCCTCGGCCAGCAAACACGAGGT	1938	0.14956761992228348	No Hit
CCTATGGAATGGCCAACCTGCTGACGGGCCCCAAGCGGAACCTGATGGCC	1860	0.1435478705136467	No Hit
CTCTAAGACCACTAAAATAACAGAACAGGACTTAAAAAACCCAAGAACCC	1797	0.13868576522205542	No Hit
TCCTATGAGAGCACAGAATGGAGAAGCCACGGCTAAGATGCGGTACAAGC	1555	0.12000910680038741	No Hit
GACCAGCACAGTGCGGCCCCCGGTGTCTCTCTTCCCGGGGCCCTGAGGGT	1526	0.11777099484076604	No Hit
GGGCCACACAGAGTCGATGTGCGGTTTGATGCGGCCCTGGTTGTACAGAG	1395	0.10766090288523503	No Hit
GTCCTACCCTAGCTATGATTCAGTTTCATATTTCATTCTGTTTCTCAGAG	1302	0.10048350935955269	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGGCGT	10	0.00709204	144.99359	6
GGCGTCT	140	0.0	67.31845	8
TCCTATG	485	0.0	56.821346	1
GTATTAC	445	0.0	55.410053	1
TATTACA	485	0.0	55.315376	2
GTATGAC	70	1.6951606E-5	51.791416	145
TATAGAC	865	0.0	50.294556	2
ATAGACC	965	0.0	45.82876	3
GCGTCTG	175	1.8189894E-12	45.569416	9
GCACGGC	105	3.8261605E-6	41.426743	6
TATACAG	70	0.0010569867	41.42674	7
CTAGGGA	215	0.0	40.464886	3
GATGATA	235	0.0	40.104614	8
GTAGGAT	370	0.0	39.188972	3
TTAAGCT	495	0.0	36.620197	145
CGGTTAG	100	1.3891964E-4	36.260994	1
ATAGAGT	80	0.002037279	36.248398	7
GCGAAAG	990	0.0	35.88779	2
CTCTTAA	1185	0.0	35.483665	9
AGACCTC	1360	0.0	33.583073	5