FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n02_chi_095.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n02_chi_095.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1064
Sequences flagged as poor quality0
Sequence length151
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGATGTCCCCATGGGCATCGATTCCACCCGCCTAGGTTGGATGGGCGTG30.28195488721804507No Hit
CAATAATAGATCGCAAGGAGGCAAGTGGAAGACACAAAGATCATTATCCA30.28195488721804507No Hit
GTTTTCTTGTTAGAAGATACAACGCTAAAGACTCATATGGACTTTGGCTA20.18796992481203006No Hit
ATTCCGACCTCCCCCTCTAATAACAAATATTTAAGACCACAAAATTAGAA20.18796992481203006No Hit
ATATAGGCATATCACAAGAGAAGTTTACACACTCAACAATCTCACTGTTG20.18796992481203006No Hit
ATAGCGACAAGGATTTTTCCGAAAAGTACAGAGACACATATCATTACAAT20.18796992481203006No Hit
GGAGCTGTCTGGGCTAATGAGACATGGGGTTCATATTGGAACTGGGACCC20.18796992481203006No Hit
GTTCAGCTGCTAAGCCGATAATAACTCTAACGGCTTTGACTGGATTGGGC20.18796992481203006No Hit
CTTCTTTTGTCTCAGGACTTTGGTGTATAGAACCACACGTTCCTAAACAA20.18796992481203006No Hit
GGATTGTGGATATTACCTGCATTGATTTATCTTCCGTGGCNGTAGAGAAG20.18796992481203006No Hit
ATATTCTAGGATCCTAGATATTATTAAGTACTAGACTAAGCTTTTGGGTT20.18796992481203006No Hit
CTGTATGCTCTGAGGCTAAAGATCTTGTTGAGATGGGGAAGGTCCAACTG20.18796992481203006No Hit
CAACTACAGAGAGAAGCGCGATCAACTTAAAACCAGCTTGGATCGTTGTT20.18796992481203006No Hit
AATGTACTTGATTTAGCTGGTTGATATAATTTATAGTATTTTTAAGAAGA20.18796992481203006No Hit
AGGTAGAACAGAAATCATTATCTTGAAATATTTTATTTTGAACTTAGGCT20.18796992481203006No Hit
TCCTAACATTCTTAATCTCTTAAAACTCCCATATGTATCTAACATGTCGT20.18796992481203006No Hit
AATATTATCCATAAATTTCTTATAAAGAAGGGCAAAAAATGCGGATATAG20.18796992481203006No Hit
TCCATAATCTTATCTTCTTTTGATTTAACTATTAAAATTAAGAAGAAATT20.18796992481203006No Hit
GAAGGTTGGTTAGTGTTTTGGAGTCGAATATGACTTGATCTCATGTGTAT20.18796992481203006No Hit
GTTCATAATATACTAATTTAGTTAAGTTCATTTTTCAAAAACACGATAAA20.18796992481203006No Hit
GAGAAGATGGAGGAGGAGAAAGCTAAGCTGAGAGAGAAGAAAGGTGTCTC20.18796992481203006No Hit
CATCTATTGTTATTGTATTTTCATTTAAATAGAGGCCAGAAGCTCTATGG20.18796992481203006No Hit
CTACGTATCTCTAAAAATGTTCTTGTCTTCTGTGATACTTTTTTTTTGTT20.18796992481203006No Hit
TTACTACGACTTCATTTATTATCATATCAGGTGAAGAGACAAAATGTTAC20.18796992481203006No Hit
CGAATATGACTTGATGTCATGTGTATGATTCAGTATAACAACTTAAATCG20.18796992481203006No Hit
ACTATCTCCTTTCCCAAAGCCATCAATATATTATCCCCACAACACCTAAT20.18796992481203006No Hit
GTGTTGGAATGATCTAGATCTTCAAGATTATGAGAAAGGAGGGAATGATC20.18796992481203006No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20.18796992481203006No Hit
CTGTTTTTTTCTTAGCGTTGAATTGGCTTTATTTCTTACAGACATATGAT20.18796992481203006No Hit
ATGGGNTTGTGTTCATATCAACCCTACATAACATCAAAGAACAAGTTAAC20.18796992481203006No Hit
AGTTTATACCACAACAAAGTTGGATTGGCCTGATTGACACATACGTAGAT20.18796992481203006No Hit
ACCAACAACTACAGGTGANTAGAGAGTAATAGAATCACATGGAATCCAGA20.18796992481203006No Hit
GTACTTGGCACCGCCATGAAGTAACGTCCTCCCATAGTAGTGAGTCTTTG20.18796992481203006No Hit
GATGCGTCCTGGTCGGATGCGGAACGGAGCAATCCGGTCCGCCGATCGAT20.18796992481203006No Hit
GTGTACTTAGACTCGATATTGCCATCGTCTGTCCATCCATTTTCTTGAAG20.18796992481203006No Hit
GAACGAATGGCATAAGCGGCTTGCGTCATGGCAAGAAGCATAACCAAAAC20.18796992481203006No Hit
ATACTCAATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTA20.18796992481203006No Hit
ACTCATTGCTCTGGAAGTTATAAACTTCCATGGCATGCTAAATATTATGG20.18796992481203006No Hit
GCTACATTCCCTGTGCCGCTCAAACTCTGAATGATATTATTGATGAGGGG20.18796992481203006No Hit
GAGCTAAAGCTTACCTTTATCTCGAGAATCACGTCCGAACTATTTAGTAG20.18796992481203006No Hit
GACCTTTTTTTACTTGTTTGATTCAACGGAACTCATTTAACCTTTCCTTT20.18796992481203006No Hit
ATGCAAAGAACTTCCTAGCATCCATAACTCCCTATCACAAAGCCTACTTC20.18796992481203006No Hit
GCACATCTATGTAAATATTGTTCACTAATAACAATCCTGGGAATTGTTTT20.18796992481203006No Hit
GCGTTTAATTTATGCGTTTGCGTTTACAGTCGGTTCCGCTATACCTCTCG20.18796992481203006No Hit
GAATTGTATAAGTGACTTTAACAAATTTTGTTATTTTATATTTAAATATT20.18796992481203006No Hit
GTGTATGATTGAGTATAAGAACTTAAACCGCAACCCGATCTTAAAAGCCT20.18796992481203006No Hit
AATAGTACCCTAATCATTTCGTAGTTATTTATTTGCTGTAAAAAAATAAT20.18796992481203006No Hit
TTTCCACAAATGTGTCAATCTGACAGAGTCGGTTGAGGATTTTGAGACAT20.18796992481203006No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)