FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n02_chi_093.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n02_chi_093.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68
Sequences flagged as poor quality0
Sequence length151
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCCCCACTCGTGGAGGCTCCTCGCGGAGGGGGGCAGGTGGAGGGGGGGG11.4705882352941175No Hit
GAGGGGCCTGCTGGGGGCAGGGGGGGATGTCGAGGTGGCTCTCGGGGGCG11.4705882352941175No Hit
ACCCTACACAGTATAACTAGATTAAAGACCAAAAGATCAACTTCCCCTAT11.4705882352941175No Hit
GACGGAAATAACGATATAACATTTCTACCAAGATAACTGGAAGGTCCAAC11.4705882352941175No Hit
TATCCGTACTATGCAAAAGTATCAAACCTACACATACTAGATCTCATATA11.4705882352941175No Hit
GTGGCGATGCCTCCGGTGTAGGTAGCTCACAAACAGAGCAGTGGCGTGAT11.4705882352941175No Hit
ACCCCAAGAAACCAAATAAACACAAGAAAAAAAACAGCCAAAAGCGAAAT11.4705882352941175No Hit
AGAATCAAAAAATCGATCAAAAAAGAATCCAAATCAAACAAACAAAAAAA11.4705882352941175No Hit
GTTAAGGTTTTGCGTTTATGTTTTAGGGTGTACGGTTTAGGGTTTAGAGT11.4705882352941175No Hit
ATTTTAAGGCATGATGGTGAAGCCTTCTCCAATGCTTGAATGGTAGCTAA11.4705882352941175No Hit
ATGTCGGTCTCTCTGTTCTTCTATGGCTTATTGCTTGACTGATTGGGTTC11.4705882352941175No Hit
ATTCATGAACACCGAATTCATGTCTAAACCTAAAGATTAAAAGAAAGGAT11.4705882352941175No Hit
ATACCTACCACCTATCCTACACAGTAAATAAACGGGCGACTTGACTCTCG11.4705882352941175No Hit
GTATATAAATTGGTCACATCGTTCATTATGTTTTCGCATTCATGCGAAGA11.4705882352941175No Hit
GGGGTGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCCGGGGCGGGGGGG11.4705882352941175No Hit
GGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11.4705882352941175No Hit
CGAGCGTGAACAGGATCCTGGGCACCCAAGAGTTCAAGCTCAGGCGACGA11.4705882352941175No Hit
CATCTAAATTAATAAAATCCTGATACAATCAGGTTCTTTCACATACTCAA11.4705882352941175No Hit
CCCAAAGACAATACAAATAGAAGCATCATCATCAGCTGCTGCCACCACAG11.4705882352941175No Hit
GTGAAGGTTTAGCTCCTGTTCAGTATATCTTGAGTGTCGCTAAGGTTGGT11.4705882352941175No Hit
ACATAATCCAAAGCTACATGAAAACGAGCAACGAGCTTCTCGATCAAGAC11.4705882352941175No Hit
GCTTACTGTCTATGTCGGGGGGTGGACGGGGGACGGGTGCCGGGGGGGGG11.4705882352941175No Hit
CTTGATGACTTAGAGTTATCTAATGGAGATGGGACAAATGAAATTCAAGA11.4705882352941175No Hit
TCACTACGCACACATGTCGCGCAGACTCGGAGACAATGTGCCGGACGGGG11.4705882352941175No Hit
ATCCATCGCCGCAATGTAAATAATCGCAATTTAAATTAAAAACAATTCAT11.4705882352941175No Hit
CAGTTGCACAGACATAGACATGTTCTGATTCTGATGATTATCACAGGTAT11.4705882352941175No Hit
CTTCCGCGTCGATTTCCTTAGCTCGTTGCGTTGGATTGTGTGCATGACTC11.4705882352941175No Hit
CTCTTCCTTTCTCCCTTGGCCCTGTTCAGTTGATCGTTGATCGGGTCTCG11.4705882352941175No Hit
GTCTTTGGCGTTGTATCTTCTAACAAGGAAACACTACTTAGGCTTATAAG11.4705882352941175No Hit
GGACAGGGTCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGG11.4705882352941175No Hit
GAATTGTATCCTTGTTGGAACACACAACGCCAAAGACTCATACGGAATTT11.4705882352941175No Hit
TTTCAGAGTCGTTCCAGCCTCGTCTGGCGCTTTGGTCAGGGGCGGCTCCG11.4705882352941175No Hit
ACATCGACCAAAGGATATCAACTTTGATAGCTTTTTCTTGATATAGCACC11.4705882352941175No Hit
CGGGGTGTCGTCGGGTGCGGGGCGGGTGGGCGTGGCGGGGTGGGTCGGGG11.4705882352941175No Hit
AAGAAACATTATAAAAATAGTAACACTCTACTAGATTAAACCAACAAAAT11.4705882352941175No Hit
ATGGGGGTGGATCGCCCGCGGGCCGCCTACTCTCCGCGGCGCTCCGGGCG11.4705882352941175No Hit
GTGGACGTTGAAGCGTATCCCCCCCCGTCTCACTGGCCGTCCTTGACCCC11.4705882352941175No Hit
CAGTTGGACATGACCAATCCATACATCAAATCATGTCAATAATTAAGTGA11.4705882352941175No Hit
AACCATAGATACTTAGTTATATATAAGCTCGTTCCGGGTTGTGTATCGNT11.4705882352941175No Hit
GTAGTTGATGTCGGCAACAACAACTATCTTCCGACCCTTTTCAGAGCTGA11.4705882352941175No Hit
GGGCGGGGTGGGGTCGTACGGGAGAGGGGCGGTATCCGGCGGGTGGGATC11.4705882352941175No Hit
ATATAAAGACATGAATCACCACATTAATCTGTGATCTTATGTACAAGACC11.4705882352941175No Hit
GACGTAGGGTCCCCGGCTCAGTTGCGGCAGGTGGCGCAAGTAGGGCCGCC11.4705882352941175No Hit
GTAATATAAAGAATAATAAATACAACCACAACATCATTAGAAATCCAAAG11.4705882352941175No Hit
GAATCAAAATCACATAAAAAAACTAAAACACACTTATCAAAATCTTATCA11.4705882352941175No Hit
TCTCAGAACTCAGAACTTTTTCTCATCCTAGATCGCTGTCATGGCCCCTT11.4705882352941175No Hit
TGGCCCATCTTGGTGATGTANCAGTAGACAGAATAAGCCAGAACAGACCC11.4705882352941175No Hit
ATTGGGGGGTGTCGGGGGGGTCTGGGGGGGGGCGAGGGGTGGAGGGGGGC11.4705882352941175No Hit
GGTAACTTAACCCACACGAATAAGTCACGTGTGGCCAGACAAGTTTTGCT11.4705882352941175No Hit
AGTCTATCTCAAGAGAAACACTTCTCACTAAGCAACTACGAGAGCGAGTC11.4705882352941175No Hit
AACTTATAATTAGTCAAACGCATTGGATTGTGACACAGTTTGACAATTGA11.4705882352941175No Hit
GTCCTAATAAAATCCACCGTGTACTAAAAAGAAAAAGAAAATAGAAGAGA11.4705882352941175No Hit
GTATATAAGTCGTAAGAGAAGTTCTTCGAGCGCTAATATATTGTAAGACT11.4705882352941175No Hit
GCGCTGGGTCATCTGTGGTTGGTCGGTGGAGTAAGGATTACAAAGTGGGT11.4705882352941175No Hit
GAATAGAAGCTATGAAAAAGTGTGTACACGTAGTAGTTAGTATAAGTATT11.4705882352941175No Hit
GGGGTGGAGGGGGGGGGCTAGGTACGTGGGGGGGTGTGGTATCGGTGGGT11.4705882352941175No Hit
ATGCTGGTGGGGGGCGAGGGGCGCGCCCGGGGCGCAGGCCGGGGGGTCGG11.4705882352941175No Hit
ATATGAAAGTANCCTCTAACTGAGTTTGTTTTAACCTTCTGTTTAATATT11.4705882352941175No Hit
AATCTGGCCGGCGACAATGAAGTTTAGCTGTGGAGGGGTCGTGGGAGGGT11.4705882352941175No Hit
GAACTAAACAACACTAAAACTTTCTTAAAAAAGAATCCCATAAAAAAATC11.4705882352941175No Hit
GTGTGGGTCTAGGGTGGGGGCGCGTGTGGGGCTAGGCGTGGTGGCGGAGG11.4705882352941175No Hit
AAAAAATTCAAGATCATTATAAAAACCAACCAAAAAATATAATTAAAGAT11.4705882352941175No Hit
CTTTGAGGGGGGGTGGTTGGTGGAGTTTCAGGGGGTGTGGTTGTAGGTGT11.4705882352941175No Hit
AGATAACTAATATATGGCTGGGCAGTNGGTGATGTTGGNGTAGNGTGTTC11.4705882352941175No Hit
GTCAGCGCTGGGGGGGCTCGGTGGGGGCCGGGGGGGGGGGGGGGCGGGGG11.4705882352941175No Hit
ATATATGATAGAGCAAGCTTGAAGGGATAAACTCAGAAGACATCAAGAAA11.4705882352941175No Hit
CTTATTAGCTTCCAGATGCCTCACAAACGGTTCTTGCTCTCTTGTCGTGT11.4705882352941175No Hit
ATATTAAAATAGAAAAATCCCATACACATCATCACTCTCCCAAGTCTCTC11.4705882352941175No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)