FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n02_chi_088.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n02_chi_088.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences145
Sequences flagged as poor quality0
Sequence length151
%GC38

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAAAGAGAACTATTAACAAAAAAAAAAAAAAAGGCCGAAGATAAAAAA10.6896551724137931No Hit
TGGGATCTGCGGGTGAGATGTGGGAGGGGGGTGGGGGGGGGGTCGGCGGG10.6896551724137931No Hit
TGTATATACCGTCGTCTCTTTCTTCTCCGAGCTTACGATTTTGGTTAATT10.6896551724137931No Hit
CAAACATCCTGNTTAAATCTAAAACCCATAGATTGCTATTGATCCGAACA10.6896551724137931No Hit
TATCCGTATTTTGTACTATAAAGACTTCATCGCAGAGTGAAATCCCAGGA10.6896551724137931No Hit
GTATGGTATATTGTTTAGTACATCATCAATGGAGGAGATTACTTATTCGT10.6896551724137931No Hit
AGTTTGTTGTTTGGGACTATTTTATATACAAACATTTAATTTTTAAAAAA10.6896551724137931No Hit
TGTCGAGATAGCAGAGAGATTTGCGTTCTACTGTCTTGCAAGCAACCTAA10.6896551724137931No Hit
GATGTTTGGTAAAAAGAATAATCTTATCCTTTGAGAATAATCAAAAATAG10.6896551724137931No Hit
ATAACTAACTACTCATTTGCTTTAAAAGTTTTCAGATGAAAGAGAAAAAT10.6896551724137931No Hit
TAATAAGCTACCTTAAAATCAGTCAATACAACCCCATTTATAGAAATCAT10.6896551724137931No Hit
CCCCTAAATGAATTCATAAAAAAAAAGAAAAGGTAAACCAATCACAAATT10.6896551724137931No Hit
AGTTATAATTTCAGAAAAGTTTGATAAAAGTGTCTGGTTAGTTGTGTTTG10.6896551724137931No Hit
GGGAATTTTTGGAGATATTTTTCGATCACTGCGAAATTCATCAATGAAAT10.6896551724137931No Hit
ACTAATTACCGTTGCTACAAAAATATATGTTTTTATATCTAGAAATAGAA10.6896551724137931No Hit
AATTATTAAAATGTGTATGTTTGATTAAAACAACATAAAACACAACCGGA10.6896551724137931No Hit
ATTCCACCAAGATCTCTTCGTTAGTTGGGGGAAGAATCCGCACGAATCGG10.6896551724137931No Hit
CATCTAAGGTCATCACAGACATGTTATTGCCTCAAACTTCCTTGGCCTAA10.6896551724137931No Hit
ATATGATAATGCTCGAGATAACTGTGGGATAACTCTTTTATATTAGCATA10.6896551724137931No Hit
TTTAAGCTCTTGCCGACCACGAGATCTATACGACGTCGTCGAGACTTGTG10.6896551724137931No Hit
ATTTTATATATACTCACAGTAAGAAGATTGTTCCACTTATATAGAAAGAT10.6896551724137931No Hit
AGACTCATATGGACTGTGGCTACACCATGAAAGCTTTGAGAAGCAAGAAG10.6896551724137931No Hit
AAAGAACTATCAAATATTATGTGATAAGTCAAAAGAAAATTTCATAGATT10.6896551724137931No Hit
ACCCTGTTAAGGTTCGTGTGAATATAGATATATTCTCATATCACCTTCAT10.6896551724137931No Hit
GTCGATGATATATTTGTCGTATATATGTGTAGTCTTTCACTGTAGAGTTT10.6896551724137931No Hit
CTATAATTGTAAAAGATGAAAACGATTATATTTCATATAAATACATTCTT10.6896551724137931No Hit
AGTTGTGAGAGCGTCTTAGTCGTTGAAATTGTTTTTTTCTGTTCCTTTGT10.6896551724137931No Hit
AGGCGGTGACGGGGGGGTAGGGGGGTGTGGCAGAGGGGGGCTGGACGGGG10.6896551724137931No Hit
GGAGAGAGCGGGTTTTTAGTATCTGAGGGAGAGGTCTGCTGATGCGTGAT10.6896551724137931No Hit
CATATGGACTTTGGTTACACCATGAATGCTTTGAGAAGGAAGAAGNAGGT10.6896551724137931No Hit
GGGAAAGGGGTAGGGCGTAGAATTATCGGGCCGGAGGTAGAGAGCTGTTT10.6896551724137931No Hit
GGGCAGGGTTAGATCGTCAGCTAGATCCTTCAGCAAATTTTCCGACACCT10.6896551724137931No Hit
TATTAAAAATTTATTTTAAAAACAATTTAAAAAAAATAGTAATAACTAAT10.6896551724137931No Hit
CTTAAGTCATGTACTAAAAATCCTCTTTCAAACTACAGGATAATGATCTA10.6896551724137931No Hit
CGTATAAACAGAACCGAAAAAAATGCAAAGAAGAAGCATCTTTTACCCGG10.6896551724137931No Hit
CAATAATAGAACTACATAAAATAAAAACAAAAATATAAAACACAAATATA10.6896551724137931No Hit
GTAGGATGGTTTGCACTGAGAACTTGAGTAAGGCGAAGATTCTTATTGGG10.6896551724137931No Hit
TGGATTCTCTTCTAAAATTGTAGCAAAGCACCGTTATAGTAATTTAGGAA10.6896551724137931No Hit
GTGGTGAAGTGAGGCGCTTACCTCAGTCGAAGAATGAACGGAGTTAGTCG10.6896551724137931No Hit
GTGGTGTTGCGGGGAGGGCGTGGGCGGTGTGTGAGTTTGCGGGGGGGGGG10.6896551724137931No Hit
AATTAGTATTTTAAAACTTAGGATATGAACCATTTTACAAAGTTTTAGGT10.6896551724137931No Hit
GTGTTAGTGGTNGTCTTCTTGCTATATTAGAAAGCGAACGAATTGTAGAA10.6896551724137931No Hit
CGATAAATTGGATCGGATTTTGCAGTTTTTTCTTCTGCAGTACCTCGGCG10.6896551724137931No Hit
GTCTTAATACTCTAAACTAATTCTCTGTAGAAAAATGCATTTGAATGGGG10.6896551724137931No Hit
CATGTGTATTATTTAGTATGAGAACTTAAACCACAAACCGATCTTATAAG10.6896551724137931No Hit
ATTGTATACCAAAATTCTTTTGAAAAATTTATGAAATCTAATAAAATATT10.6896551724137931No Hit
ATAAATTACCTCTCTAGGTTTGTCTTCATTTCTCACTAACAATATCATTT10.6896551724137931No Hit
GTATTATTTGGTACTTGGTCATTTCCAATAGCTCCCTGAGACGTTTTCAG10.6896551724137931No Hit
ACCTCCATGAGAAGTCTCAGCCTCCTGTAATCCATAGGGACATAAGATCT10.6896551724137931No Hit
AAATACAAAGCAATTCATTATAATTGAGAGACATCTTACACTACAATTTT10.6896551724137931No Hit
ACACAATAATCACTCATTGTACTACTAAACAATCAAAACAAAATACCGCT10.6896551724137931No Hit
GCATATTCTTATACAGGAAAAGAGCAAACCTCAAGTTGCGAGATTCAGGA10.6896551724137931No Hit
ATAAGAACGGTGCGTTCCGGGGTGTGAAGTGGGATGATTTCATCATTGGG10.6896551724137931No Hit
ATATTGAATAATCGGGTGTTGTTGTAATTAATAATGAGAAACAATTTGTT10.6896551724137931No Hit
TGCCAATATTCNTTCTTTTTAATAATTGGGGATTCAACACGCTCTTTAAA10.6896551724137931No Hit
ATATATATATATAGAGTGAATTGGGCAACTAAATATAAATTTACGTATCA10.6896551724137931No Hit
GTACTCGGCTTGGTGGTAGAGTGATCGAGTGAAGGTGATGAAGGTACTCG10.6896551724137931No Hit
GTCGCAATAGAGCCGATGTTTTTTCCGACTAATATCCTACTGATGGCTGA10.6896551724137931No Hit
TATATTTTCCCTCCTATTTTAGGGATTTCAGAGGTCGATCACGACGACGA10.6896551724137931No Hit
TTATAAAAATGAGAGAAAGAAACTTGATTTTAGTTCATTTCTTTGGTGAA10.6896551724137931No Hit
ATATCCCTCAAGGAAAATCCCGAATTGGATCCCAAATTGACGGGCTGTCT10.6896551724137931No Hit
CATCATCCCTCTCTCGAAAAGGGATAATTTAAAAACGAATAGACAGAATG10.6896551724137931No Hit
CTCTACAATCCTCAAAACGAAAAATCAAATAATACAAAACCAATACACAG10.6896551724137931No Hit
GTATNTAAGTATGAATCATAGTTCGAATNCTTTGTGATCTATTTGATCTA10.6896551724137931No Hit
CACAAGGATAGGAAATATCCGACAGGGTCAAGGACAAACCGTGCAACCCA10.6896551724137931No Hit
GGTTTGTGAGCTGACAACATTTGATGGGTTATTGTATCTGGTGGAAGACA10.6896551724137931No Hit
CTGTTACGGTTTAAGTTCTTATACTCAATGATACACATGACATCAAGTCA10.6896551724137931No Hit
CACCATGAAAGCTTTAAGAAGCAAGAAGAAGCTTGGTTAGTGCTTTGGAG10.6896551724137931No Hit
CCTTTTCTTTCTCTATGAATGGAATAGTTTATTTACGCGTAAAGGTTCGG10.6896551724137931No Hit
ATCCTTAATTTTTGTCAATATTTCTATTTTACTTCTAAAGTTTCTCCAGT10.6896551724137931No Hit
ACTATTGAAAACATTTCAATGGATATAACGCGTTTGGTAATAGGAATATA10.6896551724137931No Hit
ACCAAAAATCATAACAAAAAACATAACATCAAAACATCTCTCATAATTAT10.6896551724137931No Hit
ATATTATTTTTCCTAATTTTTGTTCTGTGGCGAGTTCTATCTGAAGCAGA10.6896551724137931No Hit
TTACCAAATAATATAAAAAAAATTAACATAATATTGAAAATATAAAAAAC10.6896551724137931No Hit
AAAAAACCTAGACANTTGCACAGGATCTGCGGCCAGGTGCACACAANCAG10.6896551724137931No Hit
GCTTGGTTCTGCTAGGGATGAATAGAAAGAGTTCGAACAAATGCCAGCTA10.6896551724137931No Hit
AGAATATTGTTCTGAACTCAACCTTTGTTCCCTTGTTTATCCTGATAGAA10.6896551724137931No Hit
CTATGGAAACTTCATTTGTCACCGTTGTTTCTATGAGTTTTTCACGAAAT10.6896551724137931No Hit
AGCACCCAGGCTCCCGAGGCGCCGGCGCCCCCGCCGGCGCAGGCGCGCGC10.6896551724137931No Hit
CCTTCAAAATCCGCGAGGGCGAGATCGAAAACCCTCAACAATGGTACCGC10.6896551724137931No Hit
ACTTACTACTAGGCTTTGTCTTCGTTGTCGTCAGAATCCGAAGCAGCTCC10.6896551724137931No Hit
TGAACGATTGGTTGATATAAAATGTGATTGAGAAAGCTACACGAATAGCC10.6896551724137931No Hit
GATTAAATGAAACAAAAACCGTAGAATGAAACAAACTAATATCTAGAATG10.6896551724137931No Hit
AATATATATAGNCGATGAGAAAGTCATTCAATCCACTTGTGGAGGTGGTC10.6896551724137931No Hit
TAAAAAAACAACCGCCTACATACAATTAACTATTAACAACACAGAAAAAT10.6896551724137931No Hit
CCCGGTTGGCGACGGAATCGAGCGCCGGGGCGGCTTGGCCGACACTGGCG10.6896551724137931No Hit
TGTCTATGATTGAGTATAAGAACTTAAACCGCTACCGCATCTTATAAGCC10.6896551724137931No Hit
TGGCGAAAATTGGCGATTCTCTGATGACAACCATTGACGAACTGTGATCC10.6896551724137931No Hit
ATGTTATAGACATTAACATGGGCTATCATCACTCTAAAGAAAAATTATCT10.6896551724137931No Hit
AATATTCACTGTAAAAGAAATTAGGGTTTTGAAACCAAGGAAGAGGAGAA10.6896551724137931No Hit
AGGTTACACACGCGGGTTGTTCTACAGTCTCAGTGGCTGATGGCAGTCAG10.6896551724137931No Hit
CTACTCAGAAACTTTCAGTAATAAGTTATTCTTTTACCATTTAGTTGTTC10.6896551724137931No Hit
AGATTTAAATGAGAGAAAACTAAATTACATAAAACAGACTCTATTAATAA10.6896551724137931No Hit
CTCCCTTTACTTGTCGGAGTACATCTTGGATCTGTCGATTATGTTATGGT10.6896551724137931No Hit
TTGCCACTCTCTATTTCTCTCTTTCAAAAAAGATATTAAAAAAAAATCGT10.6896551724137931No Hit
ATTAAATATAAATCTTCATAATCTCTTCCGTAGTTAATTTCAAAATTTAT10.6896551724137931No Hit
CAAAAGCACTTCTCGTACTAGATAATTATGATAAAAGCGAACTATGAAGC10.6896551724137931No Hit
GCTCTGTCCTCAGCTTCCTCCTCTCAGAAGGATATCTCCGCTTCCCGGTT10.6896551724137931No Hit
GGATTCTGCAATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCGA10.6896551724137931No Hit
TCATTACTGTTATAATTTAAATTGAAGAAGATTTCTTTTTAATTGAAAAA10.6896551724137931No Hit
GTATAAATCTGNTCTTTTGACTGCATGAGCCTTCAAGTATTCAAATGGCA10.6896551724137931No Hit
GACAAAAATTAACTTATCAAGTAACAAGAGAACAGTAACAAGAAAAACTA10.6896551724137931No Hit
CAACAAAAATATACCCCTATACTGTGACATTATACATAATACAAATTTTC10.6896551724137931No Hit
CTATAAAAAAAACAAAACAAAACACACAAGTGTACATAAGATAAAAGATA10.6896551724137931No Hit
AACTAACCTTCTTCTTGCTTCTCAAAGCTTTCATGGTGTAGCCAAAGTCC10.6896551724137931No Hit
TCATAGCATAACTACGCATATTTATCTATCACACAAACACGTTTTCACGA10.6896551724137931No Hit
GGTTCAAACGAGGAAAGGCTTACGGTGGATACCTAGGCACCCAGAGACGA10.6896551724137931No Hit
ACTTAAACCGCAACCCGATCTTAAACGCCTAAGTAGTGTTTCCTTGTTAG10.6896551724137931No Hit
TCTCTCCACTCTGCAAGTGGAGTTGTATCAGGGACTTACTGCAGATGAAC10.6896551724137931No Hit
AAGTATTACTTATACATATGTGGTATATAAAATAAAATAAATCACTTTTA10.6896551724137931No Hit
GTCATTGGAAACAAATAAAGCTCTTTTATATTTATGCCGAGTATAAACCG10.6896551724137931No Hit
CGACAAAAGCTTGTTATTATTTTATGTTGTTAGTCATTATAGCTATTTTT10.6896551724137931No Hit
ATGTTCCAAAAAGCAGGATTTGCATAGGTTAAAGCAATAAAACTATATAA10.6896551724137931No Hit
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAAGC10.6896551724137931No Hit
AGATATAGCTTGATCATCATTATGCTGAATCCTAGCCAAATACATCTATA10.6896551724137931No Hit
AAGAAGACGATGTCTCAAAACGCGCGCACTTCGAATTAAGAAACTCTTCT10.6896551724137931No Hit
GTTTAGACAAGTACCAAATAAACCAGGGTACGTACTAACTAATCTAGAGA10.6896551724137931No Hit
GGTAATAGCTAATGCTGCTGTATTTACAATGTGGCGGGTTTTAGGCAAGG10.6896551724137931No Hit
CGGCAGTCAGGGATCCCGCTTGGGTGTACTACCAGAAGGGTAGTCTTGCA10.6896551724137931No Hit
CGGAAGAGACATCTACACACGTCTCGGATACGATCCTGTCGATGATCAAT10.6896551724137931No Hit
GTACCCATTTTATGACAACTTTCAATAACTTACCCTCTATTTTTGTGCCT10.6896551724137931No Hit
CCCTTTTACTTTATCGTTCAGATTAGTTGAGGACTTATAGAGCCGTAGTT10.6896551724137931No Hit
GGGTCGGGTTGTAGGTGCAGGGGCTGGGCGGAGGGACGGTGGGTGCGTGG10.6896551724137931No Hit
ACTTTAGAGTGTTTGCAAACCTATGACTCCACACGTGAATTCCCTATAGC10.6896551724137931No Hit
AAATTCTGGAAGTAAAAAAATAATATTACATGTTAATCCACTAACGATTC10.6896551724137931No Hit
CTTTCGAAGTAACAGAAAGAAAAGCAACGACTGGAGTGGGAGAGTCAGAG10.6896551724137931No Hit
TCCATTATCTCTGTTGAAGAACCAGATAAGAGAAAATCGCAAGACTTTTT10.6896551724137931No Hit
CTCTAACATTAAGTAAACAGATTAAAAGGTTAATATTTTATATTTCACTA10.6896551724137931No Hit
CACAAAAATAAATTGATTCATCTGATTAATTAACTCTTCGTAAATCATTT10.6896551724137931No Hit
AGGCTTGGTTAAGATATGCCAGATTCCACCAAATATACAAATGGAACCTA10.6896551724137931No Hit
GGTACACTCTTAGTTTTACCTAATCTACAATAAGACCCATTTTTTATTTT10.6896551724137931No Hit
CGTAGAGNTGGNAGCAGGGTCCGTTGGTCAGATCTAGAATGGGTCGCCCA10.6896551724137931No Hit
AAGTCACTAGCTATATGACACATAATCGATCAATATATAAAATAATTTAA10.6896551724137931No Hit
CTATAATATAATATATATACAGTCGACATTGTCAGTTTTGGATTGTTACT10.6896551724137931No Hit
CAAATTCGAACAGCAATATATAAAAACTCAAATTCAGACACCACAAATCA10.6896551724137931No Hit
ATGTAACTCTCAAAACATTGACCTTTCATCTTTCTTCTGTTAAACTTTTG10.6896551724137931No Hit
AATAAAGTCATATTAGAAACAAAAACACTAACAAAACATCGTATATCTTC10.6896551724137931No Hit
ATATTGTTCCTCCNTTGATCAAGAATTTCGATTTTTGAGAAGTATTATGA10.6896551724137931No Hit
AAGAAATACAAATCACCTTGGAACGCGAAGCATTAGGTGAACAAATAGGA10.6896551724137931No Hit
CAATATAGGGTTTTCAATATTTTAGTATAAATAGATCACTTTGGGATTTG10.6896551724137931No Hit
GACTCATATGGGCTTTGGCTACACCATGAAAGCTTTGAGAAGCAAGAAGA10.6896551724137931No Hit
AAACACTAAATACTAACCAGTTCCAAATTAAAAATAAGTAATAAAAAATC10.6896551724137931No Hit
CTTATTCGCGCGCGCGCGTGCGGGCAAAATTCCCACTACACACACCCACC10.6896551724137931No Hit
ATTATAGACAGGTTATTTTCTTAAAACTCTTTACCCATTTTATTTCATTA10.6896551724137931No Hit
ATTTTGGAGTTNAGAGATCTGTCTGGTCGGATTATAATGTCAAAGCTTTT10.6896551724137931No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)