FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n02_chi_085.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n02_chi_085.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56
Sequences flagged as poor quality0
Sequence length151
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATATGAACCTGACGGTTTCATGAATCAATGTAGTTGATTAAGATAATTA11.7857142857142856No Hit
AGCCTGGGCATGTCTCAACGGTGGCAATAAACAGGATGGATCACGAGCTG11.7857142857142856No Hit
AACCATATTCAAGTGAATTTAACACATCCTTGTGAGTTTATACATTTAAG11.7857142857142856No Hit
GCTCTACGCAACAAGTACAATATCCTCACTAGAGAACAATAAGAAAAGGC11.7857142857142856No Hit
TCAAGAAATAGTGAATGGTCGTATCAATACACAAATGTATAACTCCCCAG11.7857142857142856No Hit
CCGTCTTGGTGTGTGGATACCTCAAAGTTTCACCGAGGACGGCGCCGGAG11.7857142857142856No Hit
ACAATACCCCGTCGCGTCTTTAATGCGTCTGCAAAGGATTCTACCCGCCT11.7857142857142856No Hit
AGTTGACTCTATCAGCTGCACTTATGTCTTGTTGTTGCATTTATACATAA11.7857142857142856No Hit
AGGTCCGGCGGTTGGTGGCCGCGGGCTGTGGCGTGCGATGTGCCGGGGCG11.7857142857142856No Hit
GAACCTCCCACTTCAGATAAACCAATCAAGAACAAAGCAACCGTCATATG11.7857142857142856No Hit
CCACTAAACCCATAGATCCATGCTGTCTCAGGTATCAAAGGCTTAAGTAT11.7857142857142856No Hit
ATGTCATAGAAATACCGTGTTGTCTGATTTGTCAAGGTTTCTTATGATAA11.7857142857142856No Hit
ATACCTAGTTCTTGTACTTCTAGAACTAGTAAACACGTAATAAATATATT11.7857142857142856No Hit
AAAATGGGGATTAAATTAACGTTACATAAATGCAAACATTGTCGGACAGG11.7857142857142856No Hit
ACCTGCTCGGGAGGAATTGGGCTTACGTGATCGTCAGAGCAGGCGGGTGG11.7857142857142856No Hit
AGCAAAGTTAGGCTGGGTAATTCACGGCGTCTTAGCGTGCCTGCACTGTG11.7857142857142856No Hit
ATCGGCCACGTCAAGCCTACCTGGATCGCGATGCACTGGGACAGGATTCC11.7857142857142856No Hit
GTTGTTTACGGCCGCCGCGTGGGACGGTGCATCCGCCGGAGTTCGTTTAG11.7857142857142856No Hit
GGATCCGCACACGCTGGCGTGGTCGCCGGGGCGCTGGTGGCCGTAGCGCG11.7857142857142856No Hit
ATTTTACATTATTGTATTGTTTAGCCGAGTCGTGCGAATGGAATATCAAA11.7857142857142856No Hit
AATGATGGGTTGGTCAAGGGGCGAGAACTTACGTGGTGGGAGTGGACCCG11.7857142857142856No Hit
GTATTGGGCGATGGTGTGGGGTTCGCTAGCGCATGGAGGGTGACTATCTC11.7857142857142856No Hit
GTTTCATGTCTCTTTGCATGCAGGCGTAGTCTCGTGTCCTTCCTGTGCAC11.7857142857142856No Hit
CTATATGACTATCTATATGGTAACATTCTTCTTCATTACAGGTTGGTGAA11.7857142857142856No Hit
ACTCAGTTCTATCGTGGCGTCTTTGGGTCGTATCGAACTGGCAGAGTTCT11.7857142857142856No Hit
TGGTTCCCGTTCACGACGCCTGTGTCAGAGTTGGGGCGTGGGGGGCCAGT11.7857142857142856No Hit
TCACCTAGGAGTGTATGTAATCTCAGTAGAGCTGGAGATCCACTAATTCC11.7857142857142856No Hit
GTTACAAGCAGTAATAGGAATAGGAAATTCCACCTTCAGTTCAGTTTGGT11.7857142857142856No Hit
ATTATAGCCAGATATAAAGAATAGAACAAAGATTTCCACGACAAAAAAAA11.7857142857142856No Hit
CCTGTTAAATAACAAACATCTATACATGGAGAAGATTTTTAGAGAACGAA11.7857142857142856No Hit
ATGGGGGACTCCGGGCGTATTGACCGGCTTATCCTTGGTCAATGCGCGCG11.7857142857142856No Hit
GTATTAATCGCAGTAGTAGCAGAACAGGCCCCCATGGTGGGGCTCCGACA11.7857142857142856No Hit
GTATTTGGCTGACAATAGAGACACCTGTCCTTAATTTCTATTGTTGATTT11.7857142857142856No Hit
CCCAATTAGTTACCTCCCTCTTTATCTCGACCCACTGAGAGTCCCGCGGG11.7857142857142856No Hit
GTACAAGAGATACGAGTGAAGAAGTGCCTAATCAAACAGCAACTAAGTTA11.7857142857142856No Hit
GTCTTTGCACGTGGCGGGCTTGAGATGTGGGGGTAATGCCCAACGCGTAG11.7857142857142856No Hit
ATTATAGCCCCTCAGGGAAGTAAAAAATAACACTACTCACCATCCCCATA11.7857142857142856No Hit
ATCCTCTCCGATAAGTTTTTGTTGATGTTGCTAAAGTGACCTGCATACAA11.7857142857142856No Hit
GTTCATTCCATACCGGACCAGACCGGAATAAGGTTATATACATTCTCATT11.7857142857142856No Hit
TCTTTACACTTTGCAAAATTCTCTATTCATTCATATCGTCGACGAGATGC11.7857142857142856No Hit
ACCCTTGGTTCATAGTGGGTGTTGCTGGCGCACGTATAACGGTAGGGGTT11.7857142857142856No Hit
AATTTCATCGATATCATCGATCTCATAAGTATCATACCAAATCCCATCAA11.7857142857142856No Hit
GCGAGGCATTCATCATTTGAGCCTCGTGAATCTGGGAGGAAGAGGAGGAC11.7857142857142856No Hit
AGAGATGGGATTGCNAACGGCGGCGACTAGGCCAGCACTCCAACCCGGAA11.7857142857142856No Hit
CTCCNGGGGGTGCCCGGATGGGTGGGGTGGCGGGGCCGCCCGCTGGCGCG11.7857142857142856No Hit
GTTGGGTTTGGGGGGGGGGTGGGGGGGGGTGGGGGTGGGGGGGGTGGGGG11.7857142857142856No Hit
ACTTTACCCGAAGGTTCGTCTTGGGTGGCACTGAAGAGAATCTGATAAAA11.7857142857142856No Hit
TCAGTGGGTTGTCGGTGGTTCAAACTACCCCAAGTCTCGGGTTGCAGAGA11.7857142857142856No Hit
GTCTTGTTGGTGTGGTTACTGATTCGAGCGTACTCTGTGTCTTCGGTAGG11.7857142857142856No Hit
AGTTAGTGCTGTGATTGTAGATTGGTAGTTTGCCGTACAGGTTTGGGGCG11.7857142857142856No Hit
GATTTATCTATCTGGCGGCATATGACCCGCAGCTAGTGGCGTTCCGGCCG11.7857142857142856No Hit
GTTCGAGCCGGATGAGCCCTAAACCCACTTAATGTGAGGTGGGGGCGGTT11.7857142857142856No Hit
AAACAACAAAAACATCCACCAAATAAAGAAGGTAAATACCAAATGCAAAA11.7857142857142856No Hit
GTGCGGGGTTCATTTCGCGGGTCACGCACGGCAAGCGTCAGTCCGGGCAC11.7857142857142856No Hit
TAGTTGCCGTTGCTAATATCTGTGCCGCAGCGGGGGGTGGTGGGGTGGGC11.7857142857142856No Hit
AACTCTTTGCCCCCCGTCTCGTTCCAGATCCTAGCCGCAAGGTGTCGATG11.7857142857142856No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)