FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n02_chi_083.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n02_chi_083.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences159
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCTGAAGTAACCCATGCTATACTCCCAGGAAAAGCTCGAACGACCTTC31.8867924528301887No Hit
ATATAAATTAGGATTTCAGGTTTAGGGTTTAGGGTTTAAGGTTAGGGTTT31.8867924528301887No Hit
CCATTTATTAGCCTCATTCACACATCATTACAGAAACTTTTCGTTTTTTA21.257861635220126No Hit
AAATTGGATCAGTGAATCTTTTTTTAGTCGTTTATTGCATGATAAATCAC21.257861635220126No Hit
GTTCATTCTCTTGGTGGCATGGTAATGCCTAGCAAGTGGATAGCAGCAGC21.257861635220126No Hit
GAGACTTCAACCTGAGTACAAGCCTCCCCTTCTTGAACATCACTGTCCCC21.257861635220126No Hit
CAATCAAAGCTTGGAGAAGCAAGAAGAAGCTTGGTTAGTGCTTTGGAGTC21.257861635220126No Hit
GTATTAAGAAACATGTAGGAATACTCGGAGTGGACTACTCAACCGCTTCA21.257861635220126No Hit
ATTCAGGGGAGCTTCTGGAGAAGTGCTGTGAAATGGGTGAATCTGCCTGG21.257861635220126No Hit
GCGTTAAGCAAACTTCTCACTCTGTTTATCAGATGTCATCCATAGAAATT21.257861635220126No Hit
CTTGTTAAAAGACACAAAGCCAAAGACTCATATGGACTTTGGCTACACCA21.257861635220126No Hit
TACAGAGTCTCAACACAACAGAGACTATATACACTAATTGGGTTACACGA21.257861635220126No Hit
GGTCCTACCAGCTATGTAGGAATATCCTACCTTCTTTATAAGAGCTTTCA21.257861635220126No Hit
CTAACCAACCTNCTTCTTGCTTCTCAAAGATTTCATGGTGTAGCCAAAGT10.628930817610063No Hit
GTCCACAATATGTGCCAATATTTACAAAGTAAGGGTGTAAGGTCTTACAT10.628930817610063No Hit
GTCAGCTTTGCAATGGGTTTTACTTACCTGGGAGTTATATGCACACATAT10.628930817610063No Hit
CTGATGTGAGGGCCAGTTACAGTATTTTCACTTCCCCGAGGAACGAGAAC10.628930817610063No Hit
GTATCTCGTCTGAGACTTCCTGGTATACAAAATATCAGTTTTGGATAAAG10.628930817610063No Hit
TCCCCGTCAACTATACCGAATATTTTCTCTTTTTGAATCCATTTATATTT10.628930817610063No Hit
ATTCTAAACTACTCTCAACAGTTTGATACATCTAGCGGATTTGGATTTCT10.628930817610063No Hit
TCTCTGCCTTTCGATCAACATACGTCCCATCAGGTTTTGTATGTGTTTTG10.628930817610063No Hit
GATTCTATTAGTGTAAGACAAGCTCAGAATTTTTGTGGTCCAAGTAATGA10.628930817610063No Hit
CCAATTAAAATCAAAACAGAGAGATCATCTTCCTAACAATAATCTCCGAT10.628930817610063No Hit
GTGTTGCATCCCTCTTTTTTTCGGTTTTTCTCTATTTTGTTTTGTTAAAA10.628930817610063No Hit
ATATACAATAAAGTCTCTTCCACTTTCCTACCAAATCTATCTTTATTCTG10.628930817610063No Hit
TTGGTACAGAGAAATACAATAATGCCTAAACTATTTAAGTTTCTGTTTTG10.628930817610063No Hit
ATGGAGGAGCACCCATTCGAGCATAACAGTTGGAGTGGTGGCGTGGATGC10.628930817610063No Hit
ACTATATATAATGTAATACAATAAAGAAGAAAGAAGGAGGATTTCTAATG10.628930817610063No Hit
GAGTATGTTACTCCTCTCTATCATCTTCCATTGACTTGTGATTGAATTGT10.628930817610063No Hit
ATGCCCCAGTCAAATAGTTGGCTACTGACATCTGCACAGTTCAGACGTAG10.628930817610063No Hit
ATTAGAACCCAAGTTGAGTATTCTCAACTTCCTTCCATGGCATAGATTTG10.628930817610063No Hit
GTATGATTGAGTATAAGAACTTAAACTGCAACCGGATCTTAAAGGCGTAA10.628930817610063No Hit
TTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTA10.628930817610063No Hit
TCTATGATCATGGCGAAGGCAAAGCATGGACTTGGAGAAGCAGCGGTTAA10.628930817610063No Hit
GTCTCAATATTAATCACCCAGCTGTAAATCAATGTAACAAAAATGGTGAA10.628930817610063No Hit
TTTCAAATCTAAACTAAAATATACTACACACTAACTTCAAATTAACTTAA10.628930817610063No Hit
AGTCATATTCGACTCCAAAACACTAACCAACCTTCTTCTAGCTTCTCTAA10.628930817610063No Hit
CTACCTGGTGGTTTTTTGCAGACTTCGAAAAACCCGTCATACAGTGAATC10.628930817610063No Hit
GGTACGGCCAAGAGGGAGAGCTGAAGAGTCGAGAAGATGAAGAATGAGAG10.628930817610063No Hit
GGAAAAGGAGTGACCCCTACTATGACTCATCTCAGTTACTCTTCATCACA10.628930817610063No Hit
ATTACATTCTCTGCCACTGTCCCCTCCGCGATCCGTAACACCGTGGCTTT10.628930817610063No Hit
ATTGCTATGATTGCATCGTCGGAGAGCATACTCCGATTAGCGATAGAAAA10.628930817610063No Hit
GGAAAATTATAGTCTTAAACATGTACGAATTGTTGTAGCTAGTTGTTAAT10.628930817610063No Hit
CTTGTGAGGAAGTTTCTCTCTTCCTGATGCTTTCTTTGGCTGTCTTTACC10.628930817610063No Hit
GAGCTAAATCCGATTTATTTTTCCAATTTTTCACAGTGTCGAAAAACTCA10.628930817610063No Hit
AGTTATCAGTATTTATCAAATCTGTTCATATCTAACGGAACGCTATTGGA10.628930817610063No Hit
ATATAATTGATAGATGATGATATTTTTCTAGAGAGAGAAATAGAAAGGGA10.628930817610063No Hit
ATCTCATCCGGTGTGGCGCGGGCATGGTTGGAGCCGTTGGATAGGTCGTT10.628930817610063No Hit
ATCGATGAGACCACGTCAACCAAATCGCAAGTACTTGAATTAAGGTCCTC10.628930817610063No Hit
CACAATCTAAAGTCTTGAATTTAATGGGTTTGGTTAAGATCAACTTATTT10.628930817610063No Hit
CCCTAAACCCTAAACCCTAAACCCTAAACCCTAAACCCTAAACCCTAAAC10.628930817610063No Hit
ATTTGGAACTACACCTGATAAGAATATCGAGAAGAGATGGTGAATGCTTT10.628930817610063No Hit
ACATGAGATTTAAAACGACCAGTCATGGTTAGCAACCACACTGAATATTT10.628930817610063No Hit
GTCTGGACTTACTCCTCCGAACCTCTACAATTAGAAAATGAATGAATACC10.628930817610063No Hit
GTGTGCATAAATCTCATGATAGTTACCAAAAGATTCATAGTGAACTTCGA10.628930817610063No Hit
GAGATAGATCGACTTTATGATTTATTTGTGTTTGGCTTCAAATGTATATT10.628930817610063No Hit
GTATATTCAGATAAAATAAAATGATATAATAAATGATTTGGTATAGTTTT10.628930817610063No Hit
CTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGT10.628930817610063No Hit
GGTTTTGAATTAGCCCCCCCCGATCGTATTTCACCCGAGATGAAAGAAAA10.628930817610063No Hit
GCGGGAAATAGATTTACAAGGGATTTTAAAAGGGTTTTAAAAGATTTACA10.628930817610063No Hit
ATTCTGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAACC10.628930817610063No Hit
ATGTTGGCAATAGTCTAATAGCACATTTTGTTCTGATTTTCACGTTCAGC10.628930817610063No Hit
AAATAATGGTATACCACAAGTTTACGGACAATTGTTAATAAATTGAGGAT10.628930817610063No Hit
GGAACTGCAGATTTTTTGGTACATCATATTCATGCATTTACAATTCATGT10.628930817610063No Hit
GAGACAGACTTGTCCAAAACGCCCACCACGAAGGTGCATAGTGAGAAGAG10.628930817610063No Hit
GGGATGTTTCGTTTCTTGAAAAGGTAAGAGAGTTGCTCGACGAGAAGGAA10.628930817610063No Hit
AGTCTATGTACCTAGTTTTTTTTGTTTAGAGCAAAAGAATGCAACTATTG10.628930817610063No Hit
CTATACCTTCCCTATTCATTGCGGGCTGGTTATTCGTCAGCACCGGTTTA10.628930817610063No Hit
GTTTAAGTTCTTATACTCAATGATACACATGACATCAAGTCATATTCGAG10.628930817610063No Hit
GGGTTAGGTTTAGGTGGATTCCTCTCTTCTTTAGCTAGCTAAGTGTTTAT10.628930817610063No Hit
GACATAAAGAGGTCATGTGCATGTGAATAAATAAAAAGTCGTTTCCCTAC10.628930817610063No Hit
ACATAGGCTTATAAGATCGGGTTGCGGTTTAAGTTCTTTTACTCAATCAT10.628930817610063No Hit
ATGCAAGATATTCGTGTCGAGATATACTCGCGGTTTGTGAGGAACTCGTA10.628930817610063No Hit
AGGTATGTTTTTGTGCATACAAAGTGTTTGATGAAATGCCTAAGAGACGT10.628930817610063No Hit
GACTTTGGCTACACCATGAAAGCTTTGAGAAGCAAGAAGAAGGTTGGTTA10.628930817610063No Hit
GGTTTATTGTGTCACTCTCACGTTTCCAATACGCTTCTTTCGCTATATGA10.628930817610063No Hit
ATTAATATTGTTGATGCATCTAGGTTATTATGTTCGATTCTTATAACATA10.628930817610063No Hit
TTTAAAATGAATCTAATATATTCATTATTTGTTTTAAACAAGAGACAGAA10.628930817610063No Hit
GGGTAGAGAAAATGCCCCGAGCCAATGTGCGAGTACCAGGCGCTACGGCG10.628930817610063No Hit
TTTATTATATGTTTATCTGCTCGAACAGATCCAATGATGAATACATTTTT10.628930817610063No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGGGG10.628930817610063No Hit
GTTTCCCTAAGTAAACTTCAGACATGACTTTGTCTTGACTATTCGGAACT10.628930817610063No Hit
AGTCGACGCGGTTCGGAGGGGGAGGGGGGGGGGGGGGGGGGGGGGGTGGG10.628930817610063No Hit
TTACTGAATCGGGCTCGGTTTCTTTCATCCTCATGTCCTCAAATGCAGAT10.628930817610063No Hit
GTGTACATGAGNCCGTGTGATAGAGAGAAGAATTGCTTGATCATTTGGCG10.628930817610063No Hit
ATCACACCACTCGACTGCATACTCGATGACAAGCTTCAGAGCCTTATTCA10.628930817610063No Hit
TTCTGATACCATTCACCCATAGATGATATTGAGAATTCTCAGGTTGAAAG10.628930817610063No Hit
GGGTAGACCTCATACAATAACTGTCCTAGCTCTACCGTATCTTTTGTTTC10.628930817610063No Hit
GTTTTAGGATAATTGACTAAAAACCTATTATCAATTTGGCGCTGTTGCCA10.628930817610063No Hit
ACTCATAACAGAAGTTCGCTAATTTATTTCATTCCCAACGAAGGTGCCCT10.628930817610063No Hit
ATATCCAGTTTAGTCAAATAAATATTTAAAGAACATCTAATCGGTGCAAA10.628930817610063No Hit
AAGTAGAGCTCAGCAAAGTCTCCGTCTTCATCTGAAGCTTTTGAGGTAAC10.628930817610063No Hit
GGGAAGAGCCCAGCTTGAAAATCGGACGTCTTCGGCGTTCGAATTGTAGT10.628930817610063No Hit
ATAATATACAAATCAGAAATCCACTTAGAATCGTATGATTAACATAAATA10.628930817610063No Hit
GTCTTTTAACAAGGAAACACTACTTAGGCTTTTAAGATCGGGTTGCGGTT10.628930817610063No Hit
CATTAGACCTANTAGAATTATTTTGCTGTATCCAGACTAATACCAATCCA10.628930817610063No Hit
CATCTACACAGTTTTGTCACGTAGACGTGGGCATGTCACATCTGATGTTC10.628930817610063No Hit
ATTTAATCATTACAAAATAATTATGATATTTTCACGTACCACATGATTGT10.628930817610063No Hit
GTGTATGATTGAGTATAAGAACTTAAACCCAAACCCGATCTTATAAGCCT10.628930817610063No Hit
GTATTTATTTATAAAATATTTTTATATTATAGTTTACAAATGTTATTAAG10.628930817610063No Hit
ATATAAGTTACAGCCACAACTTGAGGAAGAGACCAAAAAATTTAAAACAA10.628930817610063No Hit
GCAAAAATGCGTTCCTCATCATTAAGTCATTAAATTCATATGTTTGCTCG10.628930817610063No Hit
CTATCTGTCTCTCTATTGTCTGTAACTGTTTAATTGAACTGCAATCGACG10.628930817610063No Hit
ATATATGGCTGACTTTCTACTTTTATAAGCAATTCATATTGGTTGGTAAA10.628930817610063No Hit
GATGTCAAATGTGAGAACTGAGAACTCTCATCCGTGTTATTATTGGGCCA10.628930817610063No Hit
ACTCTGAGTTTCGACAATAAGCATAGAGATATGATTACAAAGACTTATCT10.628930817610063No Hit
TGGCCGTNTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCC10.628930817610063No Hit
CCATTAATAACAGGCCGTTTTGATCCTTTGGAACAACTCGATGAATTTAG10.628930817610063No Hit
TCCTATAGTAGTTTCAGGATCAGGGCTAAATCTATAAATAAGGAGTCAAA10.628930817610063No Hit
CGATATAAGCTTCATTTGCGAAAAGTTGATTAATAATGCATAGATCTCAA10.628930817610063No Hit
TACATATGTAATGTAATGATGATGACACCTGGTGCATTGCAAGCTTTCAG10.628930817610063No Hit
GAACAAAAACAACAACTAAAAAAATTTAAACATTATAAAAACCAACTAAA10.628930817610063No Hit
AGACTCATATCGCCTTTGGCTACACCATGAAAGCTTTGTGAAGCAAGAAG10.628930817610063No Hit
GTATGATTGAGTATAACAACTTAAACCGTAACTTGAGCTTGAAAGCCTTA10.628930817610063No Hit
GAATAATCTTATCCTTTGAGAATAATCAAAAATAGAAAGTGTTCAGTTGG10.628930817610063No Hit
CCTATTCTGCGATTAATTTTATAAACAATTCTTCACAATATCTAAGATAA10.628930817610063No Hit
GGTTTAGCCAAAGTCCATATGAGTCTTTGGCTTTGTGTCTTCTAACAAGG10.628930817610063No Hit
TGCGTGTGCCGAGCCCTGACGAGCGAGCAGAGAATCCCCCTGCGGATTTC10.628930817610063No Hit
TTTCATGCCTGGATGTAACACGTGTAAATAAAAAAGACAACTGATATTTT10.628930817610063No Hit
ATACTCAATCATACACATGACATCAAGTCATATTTGACTCCAAAACACTA10.628930817610063No Hit
CTAACGGATGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACT10.628930817610063No Hit
CGATCAAACAATGGTGATGCATCTCCCATTTGGTCATTCAAATCAACGGT10.628930817610063No Hit
ACCCAATAAGGCGGATACCTCGGATCCTGCTTGTACGAAACGGAAGATAT10.628930817610063No Hit
TTATCGGAACGAGGAGAAGAATTTTACAAAGTTAAAAACATTCCTTCTAT10.628930817610063No Hit
GAGATTTACCTCATAAGAGAAGCTTTTACNAGTATGAAATTTAAATTTTC10.628930817610063No Hit
AAAATTGACAACAAAAAACGATCGCATCATGTCCGCCATTCTACCTTTGT10.628930817610063No Hit
GTGAAAAAGAGATCACGAGATAAATTAAAGGAGAAGTAAATAAAATATGA10.628930817610063No Hit
GGATTAGGCTTTTGACGTTCTCAATCAAGTTACGTTTGTGTATAGGTTAG10.628930817610063No Hit
ATCTTTAAATAATAAAAAATAATATTGAATGAGAGACAAGTTTAAAACTT10.628930817610063No Hit
TATAAAATACCTAGTTCACAAAAATACAAGTAATATAGTATACTTATATA10.628930817610063No Hit
CTACTTAGGCTTATAAGATCGGGTTGCGGTTTAAGTTGTTATACTCAATA10.628930817610063No Hit
ACTGACAGCAGTCCCTGAGCTAAGCCTTGGAAATCTTAATGCCATAATGC10.628930817610063No Hit
GATCTGTACAAGAAGGAGGATATCAACGAAGTTCTCATCGCATACACCAA10.628930817610063No Hit
TTGTTATGCAATCTGATGTTGTATTTACCTATAAAAAGGTACAACCTTAA10.628930817610063No Hit
ACACTACTTAGGCTTTTAAGATCGGGTTGCGGTTTAAGTTGTTATACTCA10.628930817610063No Hit
AATATATACTTATATTTAACATATGTTTGGATACCTATTCGGGTTCGGGT10.628930817610063No Hit
TTTATGATCCGGTTGCGGTTTAAGTTCTTATACTCAATGATACACATGAC10.628930817610063No Hit
CCCCAAACCGTGCTGGGCGGGGTCCGGGCCCACAGCTTTCTCGAGGGCGC10.628930817610063No Hit
GTACTATCTATTCCTAGCTCTTAATCTGTATTGCCAATGAATCTCAATGA10.628930817610063No Hit
GCGCAAACCGATGTGTATAGCTTTGGAGTGTTTGTGTTGGAGGTAGTGTG10.628930817610063No Hit
GTCTNTTGAGACTATCTTTCTTTATTTTTTCCTTATATAAAAAATATATT10.628930817610063No Hit
TCCCTGGATTCCACAGTCCACTTGAACCATTTCATCAAAAATGACACGCG10.628930817610063No Hit
ACTCACTTGTACTTTAAAAACACACTCTGTTGAAGAATCTGAATGTTTGT10.628930817610063No Hit
GAGCCGAAATGGCTCGAAGGTCTCTTAAGAACAAACTTCTTCAGCATTTG10.628930817610063No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)