FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n02_chi_079.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n02_chi_079.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1079
Sequences flagged as poor quality0
Sequence length151
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAACTGGCTGTGTTGTTTTCTTTTAGTTTCTTGTAGTAAGAAAGGGATAA40.3707136237256719No Hit
CTTCATTTGTGTTCCTAGCTCTCTCAACGTCTAGATCACCCCCTAAAAAA40.3707136237256719No Hit
CTGTAAATTGTGTACTAACTATGCCATAATATGTAATTTACCAATATTTT30.27803521779425394No Hit
CAATATAATATGTCGATGTCTTTAGTAAACCAAAGTTCTCGTTTAATAGC30.27803521779425394No Hit
ACCTCGAACAGAGGCTTGTGGTAAAACCGATAGATGTGAAACTGGTTGCT20.18535681186283595No Hit
GTAGTAAAGCGTTGGTACAAAAAAAGCAAAATCATAATGAGATCTTCTTC20.18535681186283595No Hit
GTACTGGTAATTGGCCTGCTCGATCTGCGCGCGCAGGGTGGCGGCTGTCT20.18535681186283595No Hit
GAATACGGATTACAAATTCTAAATTACGCTTACCGCAAAATTCACTTCTC20.18535681186283595No Hit
GCGTATAATATACTAAAGTGTGTTTTGTTACCGGGCCTAAGGTGTATGGT20.18535681186283595No Hit
GTATAACAGATATAAGTCCCAGATTCTCAAACCATTTAAGGTCTTTGAAT20.18535681186283595No Hit
GTTTATATGTTTAATTTACAATATTACTTTTTTTGTAGATTAAAAATACA20.18535681186283595No Hit
CAATGAATTAGCATTTTTCTTGTAGTGTATAAAGTGTATATATAACTTAA20.18535681186283595No Hit
ATATATGTCTTTGTGTGTTGAAACAAGCAGGACAAAACAGCATTCCAAGA20.18535681186283595No Hit
ACAGACAACACATGATACCTCAGTTCCACCAGAACCAATAAGCTCGAATG20.18535681186283595No Hit
ATATTATTAACATAATAGATACAGTTGAACCTGGATTTATCTCCCCTCCA20.18535681186283595No Hit
ATCTTAGTTGTTATTAGCAATGGCTTGTGAAAGAGCCATCTTTCATGTTT20.18535681186283595No Hit
CTCTTGGGACGAGGAGGCGGTATAACAATTGGCTCTACTGAGCTCCCATC20.18535681186283595No Hit
GTCCCACATCATGTAAATAATATTCACATTTTACTTATCGGACTGGACAA20.18535681186283595No Hit
ACAGATTCTTGAACCCCTTTCACGCTCATGTCACGCCGAGGTACTGCAGA20.18535681186283595No Hit
TCCTTGTTCATTCTTTTGATAGTTTTAAGTGATTCTTTACTGATAAGTTT20.18535681186283595No Hit
GTGTATGATTGAGTTTAAGAACTTAAACCGCAATCGGATCTTAAAGGCGT20.18535681186283595No Hit
AAATTGTAGTTGATAACAAATTTATGTTGATACAGAATAAGTGTTTATAT20.18535681186283595No Hit
TAAGTACACAAACAATTAGGAGTACTACCAACTTTGGATACAACACATTC20.18535681186283595No Hit
GTTTAATTATCGACCACCATATAACCGTTTATTATAAAATTTAAAAACCT20.18535681186283595No Hit
CCTGTAAATATTCAAACACCAAATCAATGAACAAACAATTCATTCCCAAA20.18535681186283595No Hit
GTATTAAAAAACGAAACCCCAATTTTACGTTTCCACATCAAAGTGAAATA20.18535681186283595No Hit
TCCTTGGCGAGCTCCCGCATCTTGGCCAGGTCCTCGGCGGTCGCCGGCTC20.18535681186283595No Hit
ATCGTCGCGCTCGGACTGGCCATCGGCTTCTACTTCGTGCGCTGGGAAAA20.18535681186283595No Hit
GTAAATATATATATTAGACCGTTAGACCTAACTTGGTATTAATATTTGAC20.18535681186283595No Hit
GCCCAGAAACGTCATCAAACCCGTTTCTTCCCCGCCACAAATAATGATGG20.18535681186283595No Hit
GCTCGACAAGCTGGCCTACATGCTCGGCGGCCGCGCGGCCGAAGAGCTCG20.18535681186283595No Hit
CCGAAAATTCGCCAATGGATTTGATACGTAGCTGTTTTGGCCTCCAAGAC20.18535681186283595No Hit
TGAAAAGGTTCTTCAAGAAGAACCAAGTCCTCGGGACGATAGAGAAAAGT20.18535681186283595No Hit
GTGTTTTNGAGGCAAATATGACTAGATGTCGTGTGTATGATTCANGATAT20.18535681186283595No Hit
TACTTGTTCGACACTATATTTTGATTCTGCCCTTCTAAACGGGACGTCAG20.18535681186283595No Hit
GGCTAAGGGAGTTGTTTCCACGGGATTGAGTGAACGAGCTCATAGCCCTC20.18535681186283595No Hit
CTATTGGTTGTTTATTTGTTTTGAGTTCTCGGGTTGTATAATTGATGGAA20.18535681186283595No Hit
GGCCAGAGTGCGACTGCCTAGCGTTGGAGGCGGCTGGGCCGAATTTCCCT20.18535681186283595No Hit
TTATATAGTGAAAAGTGAGTGATATTACTAATTAATAAGATATGCAAATT20.18535681186283595No Hit
ATCCTCCACCAGAATGGATCAAATGTAAATATGTAATACATATGGTGCTT20.18535681186283595No Hit
CACCAAAACTCTTTATTCCTTCGAAACCTGGCAGCCTCAGGCACCATCCT20.18535681186283595No Hit
CAGTACCTTAATTAGAAATGTTGGCATTTGGGACGCTGAAAGCACCATGA20.18535681186283595No Hit
TGTCCTCAGTGNTTGAAATACTTTAGTTGGAGCCCAGTTAATGATTGTTA20.18535681186283595No Hit
AATGAAAGCCCATAATTAAATCACGCGTGAACGAGATTTATCCAATACAG20.18535681186283595No Hit
CAACTAGAAAATAAAGTCCACTGGGTCATATTATCTAAAATCTTATCAAA20.18535681186283595No Hit
GTTCCTTATGCACGTTTGTTTTCCTTCTACTTGTTGCAGTACATGGAAAT20.18535681186283595No Hit
CAATGATACACATGACATCAAGTCATATTCGACTTTAAAACACTAACCAA20.18535681186283595No Hit
CTTAACGAGATTACAAAATTGCAAAAGCTCTTTCTAGAAGAAAACATAAA20.18535681186283595No Hit
TATTATAAGTATATTATAATACGTTTATTACGTGCTCTGTTATCTCTGGT20.18535681186283595No Hit
TTACAGACTCCATCATCGAACATCCGGTAACAAAAGAGGAAGACGTCATA20.18535681186283595No Hit
CTCTTTGACCTTTTTAGCAAACTAAACTTAAACTCATCAGTTCCTTCTTA20.18535681186283595No Hit
CCTTCGGGATGTAGCCTGTTACAGTCATATAAATACGCATTCATGTTGCA20.18535681186283595No Hit
CTTTTAAGTGTTTCCTCAACCCATTCAGAAAAGCAGATTCAAGTAAATCT20.18535681186283595No Hit
CTTTCAAACCAAAGCACTAATAAAAGATGTCCATTAATTATCTTAGTGAT20.18535681186283595No Hit
TCCTAATATAATAGAAAAGAAAAGAACTGTCTTTTCTGTATACTTATGTA20.18535681186283595No Hit
CTATTACTTTGGCTGGATTATTCGTAACTGCTTATTTACAATACAGACGT20.18535681186283595No Hit
ATGAAACACTACTTNCATTTTATTTTTCTTATTTTGCTATTTCTAANAGT20.18535681186283595No Hit
GTTCAATGTGCTCATCAGCGCCTGACCCTGAGATGTGGATCATCCAAGGC20.18535681186283595No Hit
CTACTTAGGCTTTTAAGATCGGGTTGCGGTTTAAGTTGTTATACTCAATC20.18535681186283595No Hit
GCCCGCCAGCTCTCGGCCCGGGGCGGGACCGTGCTCTGCCGTGTGGAAGG20.18535681186283595No Hit
AAGTAGTGTTTCCTTGTTAGAAGACACAAAGCCAAAGACTCATATGGACT20.18535681186283595No Hit
CCGATACGGAAACACGACTATTTAGCAAAACTATGCACCTATCAATAATA20.18535681186283595No Hit
GTATCTTAAGATGACAACGGACAATTGGTTTCATCGGCCAAGTGACTAAA20.18535681186283595No Hit
CTCACCCTCACTGAAAAGATTCTCTACGGCCACCTCGCCGACCCTGAAAA20.18535681186283595No Hit
TATGTAGGTTGTGTAATTTTTTTTAAGGATATACCAAACTTCCGACCATA20.18535681186283595No Hit
CTTATGAAAGTTGTAGTCAGGCTTAGCATTCTGTAGTTGGCACACAAATA20.18535681186283595No Hit
CTCTTGATGACATTGCAGGTATATCTCCAGATGTATGCATGCATAGGATC20.18535681186283595No Hit
AGCTGGTACTAATATTGCAGACTGAGGCATTTTGTTTAAAAGACCTGAAG20.18535681186283595No Hit
CCTTTGGAATTTGGAAAGCAACTTCTCAAACAGGTGAACTGCCTACACTT20.18535681186283595No Hit
CTGCTCACAGTGAAAAGGCCGACGGGTTTGGCTTATACCGTTGAGCAAGC20.18535681186283595No Hit
ATTCTCATCCATCTCTGAAAACACTTTTAACAACTCTCACACTCCTTGAT20.18535681186283595No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)